Burkholderia cepacia ATCC 25416: APZ15_35080
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Entry
APZ15_35080 CDS
T04772
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bcep
Burkholderia cepacia ATCC 25416
Pathway
bcep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APZ15_35080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcep03019
]
APZ15_35080
Enzymes [BR:
bcep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APZ15_35080
Messenger RNA biogenesis [BR:
bcep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APZ15_35080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
Motif
Other DBs
NCBI-ProteinID:
ALK23105
LinkDB
All DBs
Position
3:638015..639466
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AA seq
483 aa
AA seq
DB search
MSFASLGLIDPLLRNLQDLNYQAPTPVQAKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL
QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR
QTLLFSATFSDEIRAMAASILRGPVNISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVA
ENKWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLRREEEPGFEAEHRVPETSATGQIIKKPKKPKKPKVQQAVPAARQVPGKKPRPQ
AQGGESRHKPAAAHAKPAGNEPDYTIGSPFSVQKPRGKPAGKPAAGSRKPAGKPAGGRGK
RQP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgctcggcctgatcgatcccttgctgcgtaacctgcaggacctcaat
taccaggctcctacgccggtgcaggccaaggcgattcctgccgtgctcggcggcaaggac
gtgatggccggggcccagaccggcaccggcaagacggcgggtttcgcactgccgctgttg
cagcggctggtgcagcacggcccggcggtgtccagcaaccgcgcgcgcgtcctggtgctg
gtgcccacgcgagaactggccgaacaggtgctgcaaagcttcatcgcttacggcaagggc
ctcgacctgcgattcctggccgcgtacggcggcgtgagcatcaacccgcagatgatgaag
ttgcgcaagggcgtggatgtgctcgtggccacgccgggccggttgctggatctgaatcgc
cagaacgcggtgcagttcgatcaggttcaaacgctggtgctggacgaagccgaccgcatg
ctggatctcggcttcgcgcgcgaactgaacgccgtttttgccgcgttgcccgcccagcgc
cagacgctgctgttctcggccacgtttagcgacgagatccgcgcgatggcggcgagcatt
ctgcgcggcccggtcaacatcagcgtcagcccgcccaacgccacggccagcaagatcaag
cagtgggtggtgccggtggacaagcggaacaagcccgacctcttcatgcacctcgtggcc
gagaacaagtgggagcatgcgctggtgttcgtcaagacgcgcaacggcgtggattacctg
gcggccatgctggacgaagccggttatgcggtcgacaccatccacggcgacaagccgcaa
cccgcgcgcttgcgcgcgctggagcgcttcaagacgggtgaagtccagatgctggtcgcc
accgacgtggcggcgcgcgggctcgatatcgacgatctgccgctggtgatcaacgtcgat
ctgccgatcgtcgcgcaagactatgtgcaccggatcggccgtaccgggcgcgcgggcgcc
agcggtgtcgcggtgtccctggtgtgtgccgacgaagcgccgcaactggccgcgatcgaa
gcgctgatccggcaaacgctgcgccgtgaagaagagccgggtttcgaggccgaacaccgc
gtgccggaaaccagcgcgacgggtcagatcatcaagaaacccaaaaagccgaagaagccg
aaagtgcagcaagcggtgcccgctgccagacaggtgcccggtaaaaagccgcgcccgcaa
gcgcaaggtggagaaagcaggcacaagcctgcggcggcgcacgcaaagccggccggtaac
gaaccggattacacgatcggcagcccgttcagcgtgcagaaaccgcgcggcaaaccggcg
ggcaagccggctgcgggatcgcgcaagccggccggcaaacccgccggtggccgtggcaag
cggcagccttga
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