Bacillus cereus FRI-35: BCK_07610
Help
Entry
BCK_07610 CDS
T02291
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcer
Bacillus cereus FRI-35
Pathway
bcer03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCK_07610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcer03400
]
BCK_07610
Enzymes [BR:
bcer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCK_07610
DNA repair and recombination proteins [BR:
bcer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BCK_07610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AFQ09429
LinkDB
All DBs
Position
complement(1522778..1526308)
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA
PVAGLRRFLPRKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSGI
KHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYNEPASLIDY
LPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHSFEEFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMQLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIEADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTILFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgataggtttattagagcaattttataaaaatgaagagatccaatcggtcattaatgga
ttagaagatggtttaaaagagcaacttgtatcaggtatggcaacctcttctcgttcgtta
ttaatggcggccttatataaaaaaacaaaaaaatcacaacttattgtgacgcataattta
tatcaagcacaaaaagtacatgaagatttagtggcgttacttggtgaaaaagatgtatgg
ctatatccagtaaatgaattgatagcatcagaacttggtgttgcaagcccagaattgaag
gcgcaacgtattgaagtgttaaatcgcttagctgcaggagagcatgggattattgtagca
ccagttgcaggactacgcaggtttttaccaaggaaagagttgtggaagcaaaggcaaatc
gaaatcagtctagggcaagagattgatttagatacatttttgcatactttacatcatatc
ggctatgagcgtaagtctatggtagaagctcctggagaatttagtttgcgtgggggaata
ttagatatatatccactaactgaagagttaccatttcgtattgaatttttcgatacagaa
gtcgattctattcgattatttgatgtggatgaacagcgctctcaagataaaaaagaaagt
gttagatttggtccagcaacagagtttttattttcgcaggaagaattgaaatcaggaatt
aagcatcttgaagaaggtctgactaagacgatgcaaaaactttctgatgataagttgaag
actacagtgcttgagacggtaagtcatgaaattgagatgttaaaaaacgggcaaagtata
gaacagatgtttaaatatttatctattttctataacgaacctgctagtctgatagattat
ttaccagaagatggtgtggttattttagatgagatttcacgtattcaagaaacagcatca
catcttgaaacggaagaggcggaatggtatatatcccttctcggtgagggaacaattatt
caagatttatctttctctcattcgtttgaagaatttcttcatcataaaaaaagaagtttt
gtatatttaacgttattcttacgtcatatagcacatacacatccgcaaaacattgtgaat
gtgacatgtaaaacaatgcaagatttccatgggcagatgcagttgttgaaaactgaaatt
gatagatggaacgaagggcattttacgactgtggtgctaggtacagatgatgaacgtgtg
aaaaaactacaacatattttaagtgattatgatattgaggcagatattgtagagggtaca
gatatattattgcctggaaggttacaaattgctgtaggtgatttacatgcaggatttgaa
atgccgatgcaaaagcttgttgttattactgaaaaagagctttttcataagaaagttaaa
aaatcacaacgtaagcaaaagttatcgaatgctgaacgtattaaaagttattcggaatta
aaagttggggattatgtagttcatgtaaatcatggtataggtaaattcttaggtattgaa
acattagagattaacggtgttcataaagattatttgaatattaaatatcaaggtaatgat
aagttatacgttccaattgaacaaattgaccaagtgcaaaaatatgtaggatctgagggt
aaggatccgaaagtttataaactgggtggaaatgattggaagaaggtcaaaacgaaagtt
gaaaaatctgtacaagacattgcggatgacctaattaaactatatgctgagcgcgaagct
tcaaagggttatgcatatacaccggatacggcagaacaacaagaattcgagtcctctttc
ccgtatcaagagacagaggatcaattacgttctattgaagagattaaaaaggatatggaa
cgcggacgtccgatggataggcttctttgtggtgatgtaggatatggaaagacggaagta
gctattcgtgcggcgtttaaagcaattatggatgaaaaacaagttgcaattttagtgccg
acaacgatccttgcacaacaacactatgaaacaattcgagagcgttttcaagattatcca
atcaatataggattattaagtagattccgtacgagaaagcagcaaaatgaaacaattaaa
ggtttaaaagatggcacagtagatattgtaatcggaacgcaccgtattttatctaaagat
gttacttataaagatttaggtcttcttattattgatgaagaacaaagatttggtgtaacg
cataaagaaaaaattaaacaactaaaagcaaatgttgacgtattaacactaacggcaact
ccgattccgcgtacgctccatatgtctatgcttggtgtgcgtgatttatctgttattgag
acgccgccggaaaatcgtttcccggttcaaacatatgtagtagagtataatccagcatta
atgcgagaagcgatagaacgggagcttgcaagaggtggtcaagtttacttcctatataat
cgtgtagaggatatcgaacgaaaagcagatgaaatttcgatgttagttccagatgcgcgt
gtaacttatgcacatgggaaaatgaacgagagtgaattagagtctgttatgctatcgttt
ttagaaggacagcatgatgttcttgtaagtacaacgattattgagacgggtgtagatatt
ccaaatgtaaatacattaattgtatttgatgcagatcgtatgggattatcgcagttgtat
cagcttcgtgggcgtgttggacgttctaatcgtgttgcatatgcttactttgcatacaaa
cgggataaagtgttatcggaagttgcggagaagcgcctgcaagccattaaggagttcaca
gagcttggatctggtttcaaaattgcgatgcgagatttatcaattcgtggtgctggtaac
ttgttaggagccgaacaacatggatttattgattctgtcggatttgatttatattctcaa
atgttaaaagatgcaattgaacagcgtagaggaacagacggagttgaaaatacagttaat
gttgaaattgatttagaagtagatgcatatttaccggatgcttatatttctgatagtaaa
caaaaaattatgatgtataaacagtttagaggtgtttctgcaattgaggatattgaagag
ttgcaggaagagatgatagatagatttggtgattacccgcaagaagttggttacttatta
caaatcgcaaatattaaagtattagcaatgaaagaacaaattgaattaattaagcaaaat
aaatttgaagtaacaattctgttctcagaacaagcgagtcaaaacattgatggcggaaaa
ttattcatgcttggaaatagttttggacgaatgatcggtctaggaatggaaggatcacaa
ttgaaaatcgtcatgaaaacaaatggcttagagacatcgaagtggttaacaattgctgaa
aatttattaaaaggcttgccagatgtaaaaaaagaagtcataaatgcctaa
DBGET
integrated database retrieval system
