Burkholderia cenocepacia DWS 37E-2: DM40_1125
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Entry
DM40_1125 CDS
T03488
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
bcew
Burkholderia cenocepacia DWS 37E-2
Brite
KEGG Orthology (KO) [BR:
bcew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bcew03016
]
DM40_1125
Enzymes [BR:
bcew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
DM40_1125
Transfer RNA biogenesis [BR:
bcew03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
DM40_1125
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
DUF5070
Motif
Other DBs
NCBI-ProteinID:
AIO40423
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All DBs
Position
1:1223930..1224478
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AA seq
182 aa
AA seq
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MNGDRLRAFVALMPDVAARDALHALPVTRGARRTLPAQLHVTLAFIGAIERARCDALAAR
LPALAAAHALPLQRVERIAWWPSLPRARLIVAELAPDAACASLNAELSALLRELGVPADR
RPFRPHVTLARLPRDAEGQPAHGGATGRPVALRFDALTLFESRLSRDGVSHVPIVSVPVG
RA
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
gtgaacggcgaccggctccgtgcgttcgtcgcgctgatgccggatgtggcggcgcgcgac
gcgctgcacgcgctgccggtcacccgcggcgcgcggcggacgctgcccgcgcaactgcac
gtgacactcgcgttcatcggcgcgatcgaacgcgcgcgttgcgacgcgctggccgcgcgc
ctgccggcgcttgcggccgcgcatgcgctgccgttgcagcgggtcgagcggattgcctgg
tggccgagcctgccgcgcgcgcggctgatcgtcgcggaacttgcgcccgatgctgcctgt
gcgtcgctgaatgccgagttgtccgcgctgctgcgcgagttgggcgtgccggccgaccgc
cggccgttcaggccgcatgtcacgctcgcgcggctgccgcgcgacgcggaagggcaaccc
gcacacggcggcgcgaccggacggccggtcgcgctgcgcttcgacgcgctgacgttattt
gaaagccggttgtcgcgcgacggcgtatcgcatgtgccgatcgtgtcggtgccggtcggg
cgggcctag
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