KEGG   Burkholderia cenocepacia DWS 37E-2: DM40_2405
Entry
DM40_2405         CDS       T03488                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bcew  Burkholderia cenocepacia DWS 37E-2
Pathway
bcew02024  Quorum sensing
bcew03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bcew00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DM40_2405 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DM40_2405 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bcew03019]
    DM40_2405 (hfq)
   03036 Chromosome and associated proteins [BR:bcew03036]
    DM40_2405 (hfq)
Messenger RNA biogenesis [BR:bcew03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DM40_2405 (hfq)
Chromosome and associated proteins [BR:bcew03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DM40_2405 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AIO40692
UniProt: A0A071MNF0
LinkDB
Position
1:complement(2608695..2608934)
AA seq 79 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPDAEASS
NT seq 240 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaattgttacaagacccgtttttgaacgcactgcgcaaagagcac
gttcccgtttcgatctatctcgtcaacggcatcaagctgcaagggaacattgaatcgttc
gaccagtacgtcgtgttgctccgtaatacggtgacccagatggtttacaagcacgccatc
tcgacggtcgtgccggcgcgcccggtgaatttccacccggacgcggaagcctcgtcctaa

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