Burkholderia cenocepacia DWS 37E-2: DM40_2969
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Entry
DM40_2969 CDS
T03488
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bcew
Burkholderia cenocepacia DWS 37E-2
Pathway
bcew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM40_2969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcew03019
]
DM40_2969
Enzymes [BR:
bcew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DM40_2969
Messenger RNA biogenesis [BR:
bcew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DM40_2969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AIO41280
LinkDB
All DBs
Position
1:complement(3206192..3207664)
Genome browser
AA seq
490 aa
AA seq
DB search
MSDSVAKPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTG
KTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAV
VFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSPEIKKLAATYLCNPQTIEVARSNSTNANVTQIVYDVA
EGDKQAAVVQLLRDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQIERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSL
CSPNERKQLADIEKLIKRPLDVQTLTLDKPARPRHDERGSERGDRGDRGGRRDRDEHRGA
AGRRAGGSERGHHRRHEAPVDDFFLKPYEPSAPAKQPEEPTSAQQPEKKGPKRQVAALLG
GFGMPRKPSA
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattctgtcgccaagccagtcgacgcaaccttcgatcaattcggccttgccgcc
gatatcctgaaagccattgcggagcagggctatacgacgccgacgccgatccaggcgcag
gccattccggttgtgctcgccggccgcgacgtcatgggcgccgcgcaaacgggcaccggc
aagaccgcgagcttctcgctgccgatcattcagcggctgttgccgcaggcgaatacgagt
gcgtcgccggcgcgccacccggtgcgcgcgctgatcctcacgccgacccgcgaacttgcc
gaccaggtcgccgcgaacgtgcacgcgtatgcgaagcacacgccgctgcgcagcgcggtc
gtgttcggcggcgtcgacatgaacccgcagatggccgaactgcgccgcggcgtcgagatc
ctgatcgcgacgccgggccgcctgctcgatcacgtgcagcagaagacggcgaatctcggg
caagtccagatcctcgtgctcgatgaagcggaccggatgctggacatgggcttcctgccc
gacctgcagcgcatcctgaacctgttgccgaaggaacgccagacgctgctgttctcggcc
accttctcgccggaaatcaagaagctcgcggcgacctacctgtgcaacccgcagacgatc
gaggtcgcgcgcagcaactcgaccaacgcgaacgtcacgcagatcgtctacgacgtcgcc
gaaggcgacaagcaggcggccgtcgtccagttgctgcgcgatcgcggtctcaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccggctcgcgcgcaacctcgagcgcgac
ggcgtcgtcgcatcggccatccacggcgacaagtcgcagatcgagcggatgcaggcgctc
gacgcattcaagcgcggcgagatcgaggcgctggtcgcgaccgacgtggccgcgcgtggc
ctcgacatcgccgagctgccggccgtgatcaacttcgacctgccgttcaatgcggaagac
tacgtgcaccggatcggccgtacgggccgtgcgggcgcgaccggcgatgcgctgtcgctg
tgcagcccgaacgaacgcaagcagctcgccgatatcgaaaagctgatcaagcgtccgctc
gacgtgcagacgcttaccctcgacaagcctgcgcgtccccgccatgacgagcgcggcagt
gaacgcggagaccgcggcgaccgcggcggccgtcgcgatcgcgacgagcatcgcggcgcg
gcggggcgccgtgcgggcggctccgagcgcggtcatcaccgtcgccacgaagcgccggtc
gacgatttcttcctgaagccgtacgagccgtcggcgccggcgaagcagccggaggagccg
acgtccgcgcagcagcccgagaagaaggggccgaagcgtcaggtcgcggcgttgctcggc
ggattcgggatgccgcgcaagccgtccgcgtaa
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