Burkholderia cenocepacia DWS 37E-2: DM40_4067
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Entry
DM40_4067 CDS
T03488
Name
(GenBank) ATP-dependent DNA helicase, RecQ family protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bcew
Burkholderia cenocepacia DWS 37E-2
Pathway
bcew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM40_4067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcew03019
]
DM40_4067
03400 DNA repair and recombination proteins [BR:
bcew03400
]
DM40_4067
Enzymes [BR:
bcew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DM40_4067
Messenger RNA biogenesis [BR:
bcew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DM40_4067
DNA repair and recombination proteins [BR:
bcew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DM40_4067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
AAA_30
Phage_Gene47
Motif
Other DBs
NCBI-ProteinID:
AIO39286
LinkDB
All DBs
Position
2:complement(1259166..1260968)
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AA seq
600 aa
AA seq
DB search
MATVDQRLRDLRRTMRERFGIARLRDGQEDIIRSVLARRDTLATMPSGAGKSLCYQLPAL
HLNGMTLVVSPLISLMKDQADKLQALGIDCVLLNSTLGRQDERSALQALRDGRPRIVFVT
PERLAQPAFVDVLAGRTQPRVELVVVDEAHCVSKWGHDFRPAFLDIAHAVETMGGPPVLA
LTATATPEVVEDIVHALRLRDPAIVRTGTYRPNLRYRVIHTGAGHGRREAARALELKQRR
LLDLTSELQGPGIVYVATVREVQRVWAWLAASGESVARYHGRLAARERRDEQDRFMNGDA
RLIVATNAFGMGIDKPDVRFVIHYQIPGNLDAYYQETGRAGRDGENADCVLLFDLNDRRI
QQFFLAGKYPDAELALQVFDAIAAASGGDAQCEPAPPSAVPGGTAVPAKALAERLTDVPS
AKLDVALAMLIDARIVQRDRRHCYRLRKGAAHAPLRAAVPAAAQQFVRMRERDRDALQQM
IDYAQSARCRWRLMLEYYEEDTKMERCGTCDNCLHPPHVEPLPDVHSPAAIARRRTGQLA
ERKRGWIRGEKARVARFGVGEVVMSTDEQVAILFPDGNVRTFIADRVRHVRDGEPRNRDA
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggtggaccagcgactgcgcgatctgcgccggacgatgcgcgagcgcttcggg
atcgcgcgcctgcgcgacggacaagaggacatcatccgcagcgtattggcacggcgcgac
acgcttgcgacgatgccttccggggcgggcaagtcgctgtgctaccagttgccggccctg
catctgaacggcatgacgctcgtcgtgtcgccgctgatttctttgatgaaggatcaagcc
gacaagctgcaggcgctcggcatcgactgcgtgttgctgaatagcacgctcgggcgtcag
gacgagcgatcggcattgcaagcgttgcgcgacggccgcccgcgcatcgtgttcgtgacg
ccggaacgcctcgcgcagcccgcgttcgtcgacgtcctcgccggtcgcacgcagccgcgc
gtggaactcgtcgtcgtggacgaagcgcactgcgtgtcgaagtgggggcacgatttccgg
ccggcatttctcgatatcgcgcacgcggtagagacgatgggcggcccgccggtccttgcg
ctcaccgccaccgcgacgccggaagtcgtcgaagacatcgtgcacgcattgcgactgcgc
gaccccgcgatcgtgcgcacgggtacgtaccggcccaacttgcgctaccgcgtgattcat
acgggcgccggacacggacgccgcgaagccgcacgcgcgctcgaactcaagcaacggcgg
ctgctcgatctgaccagcgaactgcaaggcccgggcatcgtctatgtcgcgaccgtgcgc
gaggttcaacgcgtatgggcgtggctggcggcgagcggagaaagcgtcgcgcgctaccac
ggacggctggcggcccgggaacgccgcgacgagcaggaccgcttcatgaacggcgacgcg
cgcctgatcgtcgccacgaacgcgttcggcatgggcatcgacaagccggacgtgcgcttc
gtcattcactaccagatccccggcaatctggacgcgtattaccaggaaacggggcgcgcg
gggcgcgatggagaaaatgccgattgcgtgctgctgttcgatctcaacgatcgccgcatt
cagcagttcttccttgcaggaaagtatcccgacgccgaactggcgttgcaggtgttcgac
gccattgcggcagcgtcaggcggcgacgcgcagtgcgaacccgcaccgccgtccgctgta
cccggcggcactgccgtgcccgcgaaagcgctggcggaacggctgacggatgttccgtcc
gccaagctcgatgtggcgctcgcgatgttgatcgacgcacgtatcgttcagcgcgatcgt
cggcattgctaccggttgcgcaagggcgcggcgcacgcgccattgcgcgcagcggttccg
gctgccgctcagcagttcgtgcggatgcgcgagcgggaccgcgacgcattgcagcagatg
atcgattacgcgcaaagcgcgcgctgccgctggcggctgatgctcgagtactacgaagaa
gacacgaagatggagcgctgcggcacgtgcgacaactgcctccatccgccgcatgtcgag
ccgctgcccgacgtgcattcgcccgcggcgatcgcgcgccgccgtaccggacagcttgcc
gagcgaaagcgcggatggatccgtggagaaaaggcgcgtgtcgcgcgtttcggtgtgggc
gaagtcgtcatgtcgaccgacgagcaggtcgcgatcctgtttcccgacggaaacgtgcgc
accttcatcgcggatcgcgtgcgacacgtgcgtgatggcgagccgcgaaatcgcgatgca
tag
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