Bacillus cereus F837/76: bcf_00305
Help
Entry
bcf_00305 CDS
T01703
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcf
Bacillus cereus F837/76
Pathway
bcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
bcf_00305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcf03400
]
bcf_00305
Enzymes [BR:
bcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
bcf_00305
DNA repair and recombination proteins [BR:
bcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
bcf_00305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEW53280
LinkDB
All DBs
Position
54535..58065
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA
PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSGI
KHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYNEPASLIDY
LPEDGVVILDEISRIQETASHLESEEAEWYISLLGEGTIIQDLSFSHSFEEFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMQLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIDADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTILFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgataggtttattagagcaattttataaaaatgaagagatccaatcggtcattaatgga
ctagaagatggtttaaaagagcaacttgtatcaggtatggcaacctcttctcgttcgtta
ttaatggcggccttatataaaaaaacaaaaaaatcacaacttattgtgacgcataattta
tatcaagcacaaaaagtacatgaagatttagtggcgttacttggtgaaaaagatgtatgg
ctatatccagtaaatgaattgatagcatcagaacttggtgttgcaagcccagaattgaag
gcacaacgtattgaagtgttaaatcgcttagctgcaggagagcacgggattattgtagca
ccagttgcaggactacgcagatttttaccaatgaaagagttgtggaagcaaaggcaaatc
gaaatcagtctagggcaagagattgatttagatacatttttgcatactttacatcatatt
ggctatgagcgtaagtctatggtagaagctcctggagaatttagtttgcgcgggggaata
ttagatatttatccactaactgaggagctaccatttcgtattgaatttttcgatacagaa
gttgattctattcggttatttgatgtggatgaacagcgctctcaagataaaaaagaaagt
gttagattcggcccagcaacagagtttctattttcacaggaagaattgaaatcgggaata
aagcatcttgaagaaggtctgactaagacgatgcaaaaactttccgatgataagttgaag
actacagtgcttgagacggtaagtcatgaaattgagatgttaaaaaacgggcaaagtata
gaacagatgtttaaatatttatctattttctataacgaacctgctagtctgatagattat
ttaccagaagatggtgttgtgattttagatgaaatttcacgtattcaagaaacagcatct
catcttgaatcagaagaggcggaatggtatatatcccttcttggtgagggaacaattatt
caagatttatctttctctcattcgtttgaagaatttcttcatcataaaaaaagaagtttt
gtatatttaacgttattcttacgtcatatagcgcatacacatccgcaaaacattgtgaat
gtgacatgtaaaacaatgcaagatttccatgggcagatgcagttgttgaaaactgaaatt
gatagatggaacgaagggcattttacgaccgttgtgctaggtacagatgatgagcgtgtg
aaaaaactacaacatattttaagtgattatgatattgatgcagatattgtagagggcaca
gatatattattgcctggaaggttacaaattgctgtaggtgatttacatgcagggtttgaa
atgccgatgcaaaagcttgttgtcattactgaaaaagagctttttcataagaaagttaaa
aaatcacaacgtaagcaaaagttatcgaatgctgaacgcattaaaagttattcggaatta
aaagttggggattatgtagttcatgtaaatcatggtataggtaaattcttaggtattgag
acattagagattaatggtgttcataaagattatttgaatattaaatatcaaggtaatgat
aagttatacgttccaattgaacaaattgaccaagtgcaaaaatatgtaggatctgaaggt
aaggatccgaaagtttataaattgggcggaaacgattggaaaaaggtcaaaacaaaagtt
gaaaaatctgtacaagacattgcggatgacctcattaaactctatgctgagcgcgaagct
tcaaagggttatgcatatacaccagatacggctgaacaacaagaatttgagtcttctttc
ccgtatcaagagacagaggatcaattacgttctattgaagagattaaaaaggatatggaa
cgcggacgtccgatggataggcttctttgtggtgatgtaggatatggaaagacggaagta
gctattcgtgcggcgtttaaagcaattatggatgaaaaacaagttgcaattttagtgccg
acaacgatccttgcacaacaacactatgaaacaattcgagagcgttttcaagattatcca
atcaatataggattattaagtagattccgtacgagaaagcagcaaaatgaaacaattaaa
ggtttaaaagatggcacggtagatattgtaatcggaacgcatcgtattttatctaaagat
gttacttataaagatttaggtcttcttattattgatgaagaacaaagatttggcgtaaca
cataaagaaaaaattaaacaattaaaagcaaatgttgacgtattaacattaacggcaacc
ccgattccgcgtacgcttcatatgtctatgcttggtgtacgtgatttatctgttattgag
acgccgccggaaaatcgtttcccagttcaaacatatgtagttgagtataatccagcgtta
atgcgagaggcgatagaacgcgagcttgcaagaggtgggcaagtttacttcctatataat
cgtgtggaggatatcgaacgaaaagcagatgaaatttcgatgttagttccagatgcacgt
gtcacttatgcacatgggaaaatgaacgaaagtgaattagagtctgttatgctatcgttt
ttagaagggcagcatgatgttcttgtaagtacaacgattattgagacaggtgtagatatt
ccgaatgtaaatacattaattgtatttgatgcagatcgtatgggattatcacagttgtat
cagcttcgtgggcgtgttggacgttctaatcgtgttgcatatgcttactttgcatacaaa
cgagataaagtgttatcagaagttgcggagaagcgtctgcaagccattaaggagttcaca
gagcttgggtctggtttcaaaattgcgatgcgagatttatcaattcgtggtgcaggtaac
ttgttaggagctgaacaacatggatttattgattctgtcggatttgatttatattctcaa
atgttaaaagacgcaattgaacagcgtagaggaacagacggagttgaaaatacagttaat
gttgaaattgatttagaagtagatgcatatttaccagatgcttatatttcggatagtaaa
caaaaaattatgatgtataaacaatttagaggtgtttctgcgattgaagatattgaagag
ttgcaggaagagatgatagatagatttggtgattacccgcaagaagttggttacttatta
caaattgcaaatattaaagtattggcaatgaaagaacaaattgaattaattaagcaaaat
aaatttgaagtaacaattctgttctcagaacaagcgagtcaaaatattgatggtggaaaa
ttattcatgctcggaaatagttttggacgtatgatcggtttaggaatggaaggatcacaa
ttgaaaatcgtcatgaaaacaaatggcttagagacatcgaagtggttaacaattgctgaa
aatttattaaaaggcttgccagatgtaaaaaaagaagtcataaatgcctaa
DBGET
integrated database retrieval system
