Burkholderia cenocepacia HI2424: Bcen2424_1110
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Entry
Bcen2424_1110 CDS
T00415
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bch
Burkholderia cenocepacia HI2424
Pathway
bch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bcen2424_1110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bch03019
]
Bcen2424_1110
03009 Ribosome biogenesis [BR:
bch03009
]
Bcen2424_1110
Enzymes [BR:
bch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Bcen2424_1110
Messenger RNA biogenesis [BR:
bch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bcen2424_1110
Ribosome biogenesis [BR:
bch03009
]
Prokaryotic type
rRNA processing factors
Bcen2424_1110
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABK07863
LinkDB
All DBs
Position
1:complement(1221527..1224706)
Genome browser
AA seq
1059 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQ
ARAFMDIVMPDNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPER
PAPSAAPQRPVEPVAAPAPAPVAAASGGFIGWLKGLFGVSPAPAPAPVAPAPAKEQAARP
ARERTEKTEQRGGDRNRNRRGGAQQGQGGRDQAAAGRGQPQRQEREGKEVREPREGREPR
EGRELREGREGREGRENREGREGREGRGPREGREPREGREPREPRENREPRERAEQPEGV
DAAGRGERQERGERRERGERRKPTQHAATLETVTRGENHPEPETDKAAAEALPGAELAAD
AEAGARDGEERRRRRRGRRGGRREREEDGAVDQAEQGVEAEGEVAAQAVTPAAPVAAEPA
HTAAPAVVAAVASAVAVEAVVEQHAAPAAVEAQPAPARVEAAPAAPVEPAVAVQAAEPAP
VAPVVAEAGPAPVAVSPTDAFEVPAAAPAAVEAPQAAPAEQAAPAAVAIEAAPVAAEPAP
VEAAPVEVVAAPAEAVAAPAPVPTPAPAPAQPAAAPASASLDVVLEQAGLVWVNTDADKF
AAAQEAASRLPRPARVPRERKVLPPADTAPMQQVETTHH
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaagctcatcgacatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcatcacccgtatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaggaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcatcgacatgcgctccgcgcgcatccaggatgccctgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgccgccctcaccaccttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgagcgccaggaactgcgcgaaacgatggcgcagctgcagattccg
gacggcatgagcatgatcgcccgtaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcaactgtggcgcgcgatcgaggccgcctcgcaaagcggc
aattccggccagccgatgctgatctatctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagccggatatcggcgaaatcctgatcgacacgaacgaaatccacgatcag
gcccgcgcgttcatggacatcgtgatgccggacaacgtcgcgaaggtgaagcgctaccac
gacgacgtgccgctgttctcccgcttccagatcgagcaccagatcgaaaccgcgtactcg
cgtacggtcccgctgccgtccggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggcacgcgcgaccaagggcgcggacatcgaggaaacggccacc
cgcacgaacctcgaagcggcggacgaagtcgcccgccagttgcgcctgcgcgacctcggc
ggcctgatcgtgatcgatttcatcgacatggaatcggcgaagagccagcgtgaagtcgag
caacgcctgaaggacgcgctcaagcacgaccgtgcgcgcgtgcagatgggcaagatctcc
cgcttcggcctgatggagctgtcgcgccagcgcctgcgtccggcgctgtcggaaggcagc
cacgtgacgtgcccgcgctgcaacggcaccggccacatccgcgataccgaatcgtcagcg
ctgcaggtcctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctgaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgacacg
ccgcactacaagctcgagcgcctgcgtcacgacgacgcgcgcctcgacgatccgcgcgcg
tcctggaagatggccgaggaagcagcccgcgaactcgagtcggaaaccggctacagcaag
cgtgccgccgaagtgaagccgaagcaggaagccgcggtcaagggcatcacgcccgagcgt
ccggcaccgagcgcggcgccgcagcgtccggtcgagcccgttgccgcccccgcccctgcg
cccgtcgcagcggcaagcggcggtttcatcggctggctgaagggcctgttcggcgtgtcg
ccggcaccggcgcccgcaccggttgctccggcaccggcgaaggagcaggcagcccgtccg
gctcgcgaacgcaccgaaaagaccgagcagcgcggcggtgatcgcaaccgcaaccgtcgc
ggcggcgcccagcaggggcaaggcggccgcgaccaggcagccgcaggccgtggtcagccg
caacgccaggaacgcgaaggcaaggaagtgcgcgaaccgcgtgaaggccgtgagccgcgc
gagggccgtgagctgcgtgaaggtcgcgagggccgcgaaggccgcgagaaccgtgagggt
cgcgaaggtcgcgagggccgtggcccgcgcgaaggtcgcgagccgcgtgaaggccgtgag
ccgcgcgaaccgcgcgaaaatcgcgagccgcgcgagcgtgccgaacagccggagggcgtc
gacgcagccggccggggtgagcgccaggaacgcggtgagcgtcgcgaacgcggcgaacgt
cgcaagccgacccagcatgcggccacgctcgaaaccgtcacccgcggtgaaaaccatccg
gaaccggaaaccgacaaggctgctgcagaagccctgcccggcgcggaactggcagccgat
gcggaagccggcgcacgtgacggcgaagaacgtcgccgtcgccgtcgcggccgccgcggc
ggtcgtcgcgagcgcgaggaagacggcgcagtcgaccaggcagagcaaggtgtcgaagcc
gaaggtgaagtcgcggcgcaagccgtgacgccggccgcaccggtcgcagccgaaccagcc
cacacggccgcaccggcagtcgtcgcggccgtggccagcgcggtcgccgtcgaagccgtc
gtcgagcagcatgccgcaccggccgctgtcgaagcgcagccggcaccggcacgcgtcgaa
gcggctccggccgccccggtcgagcccgccgtcgccgtccaggcagcagaaccggcaccg
gtcgcaccggtggtcgcggaagcgggcccggctccggtcgcggtgtcgccgaccgatgcg
ttcgaagtgccggcagccgcgccggccgctgtcgaggcgccgcaagccgcgccggccgag
caagctgctccggccgccgtggcgatcgaagccgctccggtggcagccgaaccggcaccg
gtcgaagccgccccggtcgaagtcgtcgccgcaccggccgaggccgtcgctgcaccggca
ccggtaccgacgccggctcccgcccccgcacaaccggcagccgcgcccgcttcggcgagc
ctggatgtcgtgctggagcaggccggtctcgtctgggtgaacacggacgccgacaagttc
gcggccgcgcaggaagccgcgtcgcggctcccgcgcccggcccgcgtgccgcgcgaacgc
aaggtgctgccgccggccgatacggccccgatgcagcaggtcgaaacgacgcaccactga
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