Burkholderia cenocepacia HI2424: Bcen2424_1546
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Entry
Bcen2424_1546 CDS
T00415
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bch
Burkholderia cenocepacia HI2424
Pathway
bch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bcen2424_1546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bch03019
]
Bcen2424_1546
03016 Transfer RNA biogenesis [BR:
bch03016
]
Bcen2424_1546
Enzymes [BR:
bch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Bcen2424_1546
Messenger RNA biogenesis [BR:
bch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bcen2424_1546
Transfer RNA biogenesis [BR:
bch03016
]
Prokaryotic type
tRNA degradation factors
Bcen2424_1546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
WHD_RNase_R
CSD
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
ABK08298
LinkDB
All DBs
Position
1:1711322..1713805
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AA seq
827 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKAKVGQVV
VVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQPALDEAAALPDKV
RPADLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPVKVGRGDGFRLIVAIADVSHYVQPG
SGLDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMVITARGEIKAYQ
FYPAVIHSAARLTYTEVAAVLSNTKGPEAARRADLLPHLQDLYGVYKSLFAARQKRGAID
FDTTETYIVCNSQGKIEQIVPRQRNDAHKLIEECMLAANVCAADFLKRNKHPGLYRVHAG
PTPEKLENLRAFLRGMGLSLGGGDKPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPKAPEGFELNTALSPR
ARAMQQADDEARNRSRSNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKAPRPSPAPAAGIDRNGSGNGPRVRALPPVEETVPRR
KKAASAPSVAVQEARAARGAAKKKSGGAGGGAPAKPTAKKARARKKY
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccgtaccccattccgagccgtgaagagattctcggcgtgctgcgtacg
agcgacgcgccgctggccgccaacgacatcgccgaagccctgtcgatcaagcgtcaagag
cgcgaggggttcttccggcgtgtcgccgcgatggagcgcgacggccagatccgcctcgac
aagcgtggccactaccagttgacccatccgtcgaatttcgtcgccggtcgcgtgcagggg
catcgcgacggctacgggttcgtgattcgcgacgacggccaggacgacctgttcttgccg
aacggcgaaatgcagaaagtgatgcacaacgaccgcgtgctcgcgcggatcgtcggctac
gatcgccgcggccggccggaagggcacgtcgtcgaagtcaccgaacgcgcgaacaagcgc
gtaatcggtcgcctgctgaacgagaacggtgcgctgatcgtcgcgccggaagacaagcgc
atcggccacgacatcctgatcacgcagaacgtgaagaaggcgaaggtcgggcaggtcgtc
gtcgtcgaactgaccgatttcccgagccgtcattcgcagccgctcggccgtgtcgtcgaa
gtgctcggcgatatcgacgatccgggcatggaaatcgaaatcgcggtgcgcaagtacggc
gtgccgcatgaattcagccagccggcgctcgacgaagccgcggcgctgcccgacaaggtg
cgcccggccgatctgcgtttccgcgtcgacctgcgcgacgtgccgctcgtgacgatcgac
ggcgaggacgcccgagacttcgacgatgccgtctactgcgagccggtcaaggtcggtcgc
ggcgacggcttccggttgatcgtcgcgatcgccgacgtgtcgcactacgtacagccgggt
agcgggctcgatgccgacgcgctggagcgcagcacgtcggtctacttcccgcgtcgcgtg
attccgatgctgccggagaagctgtcgaacggcctctgttcgctgaatccgcaggtcgat
cgctgcgtgctcgcgtgcgacatggtgatcaccgcgcgcggcgagatcaaggcctaccag
ttctacccggccgtgatccattcggcggcgcgcctcacgtacaccgaagtcgcggccgtg
ctgtcgaacacgaaggggccggaggccgcgcgccgcgccgatctgctgccgcacctgcag
gatctgtacggcgtctacaagtcgctgttcgccgcccgtcaaaagcgcggtgcgatcgac
ttcgacacgaccgagacctacatcgtctgcaactcgcagggcaagatcgagcagatcgtg
ccgcgtcagcgcaacgacgcgcacaagctgatcgaggaatgcatgctggccgcgaacgtc
tgcgcggccgatttcctgaagcgcaacaagcatccgggcctgtaccgcgtgcacgcgggg
ccgacgccggagaagctcgagaacctgcgcgcgttcctgcgcggcatgggcctgtcgctc
ggcggcggcgacaagccgcatgcgagcgactacgcggcgctgatggcgcagatccgcgac
cggccggacgcgcagatgctgcagccgatgctgctgcgctcgatgcagcaggccgtctac
agcccggacaacatcggtcacttcggcctcgcgtacgaggcgtacgcgcacttcacgagc
ccgatccgccgctatccggacctgctcacgcaccgtgcgatctacgcgatcctgtcgggc
aagaagtacacgccgaaggcgccggaaggcttcgagctgaacaccgcgctgtcgccgcgc
gcccgcgcgatgcagcaggccgacgacgaagcgcgcaaccgctcgcgctcgaacacggcg
atctgggaagagctcggcttgcactgctcggcgaacgagcgccgtgcggacgaggcgtcg
cgcgacgtcgaagcgtggctcaagtgctacttcatgcgcgacaagctcggcgaggagtat
ggcgggatggtgaacggcgtgacgtcgttcggcatcttcgtgcagctcgacacgctgttc
atcgaagggcttgtgcacgtgacggaactcggctcggactacttccagtacgacgagatc
aagaacgagttgcgcggcgaacgcacgggcatccgctatcgcctgtcggatcgcgtgcgc
gtgcaggtgagccgcgtcgatctcgatgcgcgcaagatcgatttccgcctcgtgcgcgat
acgccggtgaaggcgccgcgtccgtcgcccgcgccagctgccggcatcgatcgcaatggc
agcggcaatggcccgcgcgtgcgtgcgctgccgccggtggaggaaaccgtgccgcgtcgc
aagaaggccgcgagcgcgccgagcgtcgcggtgcaggaagcgcgcgccgcgcgtggcgcc
gcgaagaagaagagcggcggtgccggcggtggcgcacccgcgaagccgactgcgaagaag
gctcgcgcccgcaagaagtattga
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