Burkholderia cenocepacia HI2424: Bcen2424_2798
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Entry
Bcen2424_2798 CDS
T00415
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bch
Burkholderia cenocepacia HI2424
Pathway
bch03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Bcen2424_2798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bch03400
]
Bcen2424_2798
Enzymes [BR:
bch01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Bcen2424_2798
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Bcen2424_2798
DNA repair and recombination proteins [BR:
bch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Bcen2424_2798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
C1_2
RNHCP
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ABK09548
UniProt:
A0KAM1
LinkDB
All DBs
Position
1:complement(3094307..3095134)
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AA seq
275 aa
AA seq
DB search
MPELPEVEVTRRGIEPFVAGRRVERVDVRTAMLRWPVPAGLAEQLRAREVLAVERRGKYL
LFEVDAGWFIVHLGMTGTLRVLPAAGVPVAAKHDHIDWIFDEFVLRFRDPRRFGAVLWHP
REAGDVHAHPLLASLGVEPFSPAFTGALLHARTRGRTVSVKQALLAGDMVVGVGNIYASE
SLFRAGIRPTTAAGKVSLPRYERLADAVRATLADAIERGGSTLRDFVGSNGESGYFQLDC
FVYDRAGQPCRVCGTPVRQIVQGQRSTYFCPTCQR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccagagttgccagaagtcgaagtcacgcgccggggcatcgagccctttgtcgcgggc
cgccgcgtcgagcgtgtcgacgtccgtaccgcgatgctgcgctggcccgtgccggcgggg
ctcgccgagcagttgcgcgcgcgcgaggtgctcgccgtcgagcgccgcggcaagtacctg
ctgttcgaggtcgatgcgggctggttcatcgtccatctcgggatgacgggcacgctgcgc
gtgctgcccgcggccggcgtgccggtcgccgcgaagcacgaccacatcgactggatcttc
gacgaattcgtgctgcgcttccgcgatccgcgccgcttcggcgccgtgctgtggcacccg
cgcgaagcaggcgacgtgcatgcgcatccgctcctcgcgagcctcggcgtcgagccgttc
tcgccggcattcaccggcgcgctgctgcatgcgcgcacgcgcggccgcacggtgtcggtc
aagcaggcgctgctcgcgggcgacatggtcgtcggtgtcggcaacatctatgcgtcggag
agcctgtttcgcgccggcatccggccgacgacggccgccggcaaggtttcgctgccgcgc
tacgagcggctggccgacgcggtgcgcgcgacgctcgccgacgcgatcgagcgcggcggc
agcacattgcgcgatttcgtcggcagcaacggcgaaagcggctacttccagctcgactgc
ttcgtctacgatcgtgccggccagccgtgccgcgtttgcggcacgccggttcgccagatc
gtgcagggtcagcggtcgacctatttctgcccgacgtgccagcgttga
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