Burkholderia cenocepacia HI2424: Bcen2424_3692
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Entry
Bcen2424_3692 CDS
T00415
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bch
Burkholderia cenocepacia HI2424
Brite
KEGG Orthology (KO) [BR:
bch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bch03016
]
Bcen2424_3692
Enzymes [BR:
bch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Bcen2424_3692
Transfer RNA biogenesis [BR:
bch03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Bcen2424_3692
Prokaryotic type
tRNA splicing ligases
Bcen2424_3692
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ABK10430
LinkDB
All DBs
Position
2:complement(544051..545274)
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AA seq
407 aa
AA seq
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MTDMDYQVMELANGKPVKMWTQGVAVEDEARAQLRNTAQMPFIFGHVAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMMAARTTLTAADLPDSLGGLRSAIECAVPHGRAPGRR
DPGAWGDRTPAAVTDAWKSLQPGFQRIVDKYPKLAKTNHYAHLGTLGTGNHFIEVCIDEA
DRVWFMLHSGSRGVGNAIGSLFIELAQADMRQHIANLPDRNLAYFTEGSRHFDDYVEAVG
WAQDYARRNRQAMMDAVIGAARGVIAKPFSVDEHAVNCHHNYVQRERHFGEDVLVTRKGA
VSAQKGQLGIIPGSMGAKSFIVRGLGNPESFCSCSHGAGRTMSRTEAKRRFTADDQAKAT
QGVECRKDAGVVDEIPMAYKDIDAVMAAQRSLVEVVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacatggattatcaggtgatggaactggcgaacggcaagccggtgaagatgtgg
acgcaaggtgtcgccgtcgaggacgaagcgcgcgcgcaactgcgcaacaccgcgcagatg
ccgttcatcttcggccacgttgcggtgatgccggacgtgcacctcggcaagggctcgacg
atcggcagcgtgattccgacgaagggcgcgatcatcccggccgcggtcggcgtcgacatc
ggctgcgggatgatggccgcgcgcacgacgctgacggcggccgacctgcccgattcgctt
ggcgggctgcgcagcgcgatcgaatgcgcggtgccgcacggccgtgcgccgggccgccgc
gatccgggcgcgtggggcgatcgcacgccggccgccgtgaccgacgcgtggaaatcgctg
cagccgggctttcagcgcatcgtcgacaagtatccgaagctggcaaagacgaaccactac
gcgcatctcggcacgctcggcaccggcaaccacttcatcgaagtgtgcatcgacgaggcg
gaccgcgtgtggttcatgctgcacagcggctcgcgcggcgtcggcaatgcgatcggcagc
ctgttcatcgaactcgcgcaggccgacatgcggcagcacatcgcgaacctgcccgaccgt
aatctcgcgtatttcaccgaaggcagccggcacttcgacgattacgtcgaagcggtcggc
tgggcgcaggactacgcgcggcgcaaccggcaggcgatgatggacgcggtgatcggcgcg
gcgcgcggcgtgatcgcgaagccgttctcggtcgacgagcacgcggtgaactgtcaccac
aactacgtgcagcgcgagcgccacttcggcgaagacgtgctcgtgacgcgcaagggcgcg
gtgtccgcgcagaaggggcaactcgggatcattccgggctcgatgggcgcgaagagtttc
atcgtgcgcgggctcggcaacccggaaagcttctgctcctgcagccacggcgcgggccgg
acgatgagccgcaccgaagcgaagcgtcgcttcacggccgacgatcaggcgaaggcgacg
caaggcgtcgaatgccggaaggacgcgggcgtcgtcgacgaaatcccgatggcgtacaag
gacatcgacgcggtgatggcggctcagcgcagcctcgtcgaagtggtgcatacgctgcgc
caggtggtgtgtgtgaagggatag
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