Borreliella chilensis: OY14_03110
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Entry
OY14_03110 CDS
T03543
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bchi
Borreliella chilensis
Pathway
bchi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bchi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OY14_03110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bchi03400
]
OY14_03110
Enzymes [BR:
bchi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OY14_03110
DNA repair and recombination proteins [BR:
bchi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OY14_03110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
UB2H
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJA90415
UniProt:
A0A0A7UWE0
LinkDB
All DBs
Position
complement(647866..651240)
Genome browser
AA seq
1124 aa
AA seq
DB search
MNIDEILTTILKNNSNLKKMKEYLEQNTFFSLTGYEGFFKAFLINRIKEYSKTGKIILIV
KDELTLDKIKNDLKIITNQIFEFNYFSPLVYKGIGSKSTIFNERAKFLINLYKKTPGIYI
TVLTSLLSRIPDRNTLLKEVFKITKNTKINTTKIEKTLVKLGYEKTFRVTIPGEFTIKGE
IIDLYSFGEQNPIRIVLNFDKIEEIRKFNPLTQLKQDDEILEFQIIPKKEIIWNNENIYN
LETKIETAEYKKFIEELHLKKETKTEEMFYPLVANTYLSDEIEKHIPIVNFEINNFEKEI
EKIRQEYENLYKEAKEAGKNIIDPKRILLNSKNFNLKSDVLFSKIKSSKSKEIVEFKIES
QRSFFSNIMLAKEEFKNWLKNGFKIIIAAESESQKEKLKYIFKELPKVTIEVLKISSSLI
LEKEKIAIILESNIFNTGQKINKVFESSKTKAIDSFIEIEKNSHVVHINHGIGIFRQIKR
IKTSSIEKDYIEIEYAEGEKLFIPIEQTNLIQKYIGSESKNVKLDKISSKTWIKNKANAK
KRIEEIADKLIELYSKRESAKGIKYPKDNELQLLFESEFPYDETPDQITAIKEIKKDMMS
FKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFNTFEKRFKNFPI
KIEVLSRFTNKNAEKRILKELKSGEIDIIIGTHKILSKKFACKSLGLIIIDEEQRFGVKE
KEKLKEIKISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPKNRVKIETYLESFNELLI
KHAIESELSRDGQVFLVNHNIEELHYLKTLIEKLTPYARIAIIHGKLTGEEIEGIMHNFI
KKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLYQLKGRVGRGSEKAYAYFLYQD
SGKLNERSIERLRAITEFSELGSGFKIAMKDMEIRGVGNLLGREQHGEIESIGLDCYLTM
LNKAIEKKMGKISSEEDIDIEINYSGFIPDNYAKNEQSKILIYKKIFEIQTEEENKKIRE
EIHNNFGPIPKEINSLLMLTELKILAKKLNIAKLKETNRTLEIEYKNTESIPMEKIIEIL
QKHPNLLGLNPSNQKSIFLSLKNIEKSEKINYIYKNINLLKENT
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagatgaaatactaacaacaatattaaaaaataattccaatttaaaaaaaatg
aaagaatatttagaacaaaacacatttttttcattaacaggatatgaaggatttttcaaa
gctttcttaattaacagaatcaaagaatatagtaaaaccggaaaaataatattaatagtt
aaagatgagcttacattagataaaatcaaaaatgatttaaaaataattacaaatcaaata
tttgaatttaactattttagtccgcttgtatataaagggattggttcaaaaagcacgatt
tttaacgaaagagctaaattcctgatcaatctttataaaaaaactcctgggatatacatt
acagtcttaacatcattgctcagcagaatacctgatagaaataccttattaaaggaggta
ttcaaaattacaaaaaatactaaaattaacacaacaaaaattgaaaaaactcttgtaaaa
ttagggtatgaaaaaacattcagagtaacaattccaggagaatttacaataaaaggagaa
attatagacctatactcttttggagaacaaaacccaataagaattgtactaaactttgat
aaaatagaagaaataagaaaattcaatcctttaacccaattaaaacaagatgatgaaatt
ttagaattccaaattattccaaaaaaagaaattatttggaataatgaaaatatttataac
ttagaaacaaagattgaaactgctgaatataaaaaatttattgaggagttgcatttaaaa
aaagaaacaaaaacagaagaaatgttttatccactagtagcaaatacttatttaagtgat
gaaattgaaaaacatatacctattgtcaactttgaaattaacaattttgaaaaagaaatt
gaaaaaatacgccaagagtatgaaaatctttacaaagaagcaaaagaagctggtaaaaat
ataattgatccaaaaaggattctcttaaattccaaaaacttcaatctaaaaagcgatgtc
ttattctcaaaaattaaaagttctaaatctaaagaaattgtagaatttaaaattgaaagc
cagagaagctttttttcaaatattatgcttgcaaaagaagaattcaaaaattggctaaaa
aatggatttaaaatcattattgcagcagaatctgaatcacaaaaagaaaaacttaaatat
attttcaaagaattaccaaaagtaacaattgaggttttaaaaatatctagctctttaata
ttagaaaaagaaaaaattgccattattcttgaatcaaacatcttcaatacaggtcaaaaa
ataaacaaagtctttgaatcttcaaaaacaaaagctattgattctttcattgaaattgaa
aaaaatagccatgtggttcacataaaccatggaattggcatattcaggcaaataaaaaga
ataaaaacaagctctattgaaaaggactatattgagattgagtacgccgaaggagaaaaa
ctatttattccaatagaacaaacaaatttaatccaaaaatacattggtagtgagtctaaa
aatgtaaaattagacaaaattagttctaagacatggataaaaaataaagcgaacgcaaaa
aaaagaatcgaagagattgcagacaaattaatagaactttactcaaaaagagaaagtgcc
aaaggcattaaatatccaaaagataacgaattacaactgttatttgaatctgaatttcca
tacgatgaaactccagatcaaataacagcaataaaagaaatcaaaaaagacatgatgagc
tttaaggtaatggatcgccttctttgtggagatgttggatttggaaaaactgaagtagca
atgagagccgcatttaaagctgtaatgggcaacaagcaggttattgtcctttcaccaaca
actattctagcagaacagcatttcaatacatttgaaaaaagattcaaaaattttccaatc
aaaattgaagtattaagcagatttacaaacaaaaacgcagaaaaacgaattttaaaagaa
ttaaaaagtggagaaattgatatcataataggaacacataaaattctttcaaaaaaattc
gcctgcaaaagtttgggattaataataattgatgaagagcaaagatttggcgtaaaggaa
aaagaaaaacttaaagaaataaaaatttctgttgattgtcttgctctttctgcaacacca
attcctagatctcttcacatgtcactaattaaactaagagatatttctgttttaaaaatc
ccacctaaaaacagggtaaaaatagaaacttatttagagtcctttaatgaacttttaata
aaacatgcgattgaaagtgaactatctcgagatggtcaagtttttttagtaaaccataat
attgaagaattgcactatttaaaaacactaattgaaaaattaactccttatgcaagaatt
gcaataattcatggaaaactcacaggtgaagaaattgaaggaataatgcacaattttatt
aaaaaagcatatcaaattctattggcaacaacaataattgaaaatggcatagatattcca
aatgcaaatacaataataatcaataatgcaaataagtttggactagcgcagctatatcaa
ctaaaagggagagttggaagaggctctgaaaaagcttatgcttattttttgtatcaagac
agtggaaaactaaatgaacgctctattgaaaggctaagagcaataaccgaattttcagaa
ctaggatcaggatttaaaatagcaatgaaagatatggaaataagaggagttgggaatttg
cttggcagagaacagcatggagaaattgaatcgattggattagattgctacctaacaatg
ttaaacaaagcaattgaaaaaaaaatgggaaaaatttcatcagaagaagacattgatatt
gaaattaattacagcggctttattcctgataattatgcaaaaaatgaacaatccaaaata
ctaatctacaaaaaaatctttgaaattcaaaccgaagaagaaaataaaaagataagagaa
gaaatccataataattttggacccattcctaaagaaataaatagcttactaatgttgact
gaacttaagattttagcaaaaaaattaaacatagcaaaactaaaagaaacaaatagaact
ttagaaatagaatataaaaatacagagagcattcctatggaaaaaataatagaaatactt
caaaaacatcctaatttattaggattaaatccatcaaatcaaaaatcaatctttttaagc
ttaaaaaatattgaaaaatctgagaaaataaattatatatataaaaatattaacttacta
aaagaaaacacatag
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