Bifidobacterium choerinum: BcFMB_00815 Help Entry BcFMB_00815       CDS       T05748                                  Name (GenBank) hypothetical protein   KO K03657   ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] Organism bcho  Bifidobacterium choerinum Pathway bcho03420   Nucleotide excision repair bcho03430   Mismatch repair Brite KEGG Orthology (KO) [BR:bcho00001]  09120 Genetic Information Processing   09124 Replication and repair    03420 Nucleotide excision repair     BcFMB_00815    03430 Mismatch repair     BcFMB_00815  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:bcho03400]     BcFMB_00815 Enzymes [BR:bcho01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.4  DNA 3'-5' helicase      BcFMB_00815 DNA repair and recombination proteins [BR:bcho03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     GGR (global genome repair) factors      BcFMB_00815    MMR (mismatch excision repair)     Other MMR factors      BcFMB_00815 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  UvrD-helicase UvrD_C PDDEXK_1 AAA_19 UvrD_C_2 AAA_30 DEAD Efg1 Motif Other DBs NCBI-ProteinID:  ATU19713 UniProt:  A0A2D3D3R1 LinkDB All DBs Position complement(198609..203168) Genome browser AA seq 1519 aa AA seqDB search MDTQHTSTDEPQQQPPRRTKPKKTPSPQQQKIIDAPKDDDLLVVAGAGSGKTFTMTERII RFIDDGVPPEHILGLTFTRKAASELLTRVSAAVAEQTKQANRPEQPERSKKSMFMKPDVY TYDAFFQSIVRQYGLLVGFDQQTQPLSEAGARQLIATTVGEHMDVVRDSGVEFTRFTAIV DDVFALSSNIASSMIGGDCDSVDDAIARIRAWDRRFLELIDRMGIDFDAVPDEEPTVPDV SAKAKRLSKYQYDRRVKANGEPYAQAARTNERIDYWRDHIQQFHIRQMRDATVKRELLLT LVQLVADAKRRNHMAEFSDFTVAAYQLVTRFPSIGERYRARYTHVLLDEYQDTSTTQAML LAKLFCAPDGRSAVNAVGDPFQSIYAWRGASPGAFRLFQRSFGLPDDYEPRALSETRRNS VVVLAAANHLTAALRERRRDGSSVQVHEVDVHTLSNVRDGSAEVHEGTVGVLGYATRGQE IDGVVRFAKHAIAKHEHEDAERVARGEEPRGTKPHVAVLFRGKTQIPYFQAALEEAGLTT FAVGTSSLLEQPEVLDVLALMHVVADRSDAASLMRLLATPRFGLGAADLRALARLADERN VDYRYRALVEAGVVGRDNADAATRRRVVREHAREVPNAVFAADLLMDDDADETIEQAHIS KAGKRALHHAGAVLRRVRQVAYGPIEEVMRAAVEALDLDIDMLVAAAERRRRAGEGGDAA NATATRASIDALLRTVRTYVQEIATMQTPTLRGYLSWIDAQRNVDEGAAPMPDTPVDVIL MTVHQSKGLEWDAVAVVGLQATAFPSNQGERLKVDYVSHPGVTSPDDGDGPSGEWTAPDY LAKAHTWITDPAAVPVPVRSDAAILPAFPGNARKAAESNDYDPIAALGADDEVGLLDDDV FGSLREYTIVNDDGFPRNADALWGEAELWTMPQTEEFGRRLYADERRLMYVALTRARDEA LLTYSEDASTARTPDDVVSPRTAAAAHAVACAAGYAAWDDPSARDVVVPYKSSMFWREVH ESLLFDASRRDVHERVVPADHVVAAVRAAREGETGAEAAALDAQWTHAMHRPALIARYNT ARAAEEQVARAKRALERAQEEGRPKEELGALKERLHELEQDMYDHAFTLAADEVGDDAPA TWTLDEIGEARPAGYFAGEHARDFADAVVGDAWNTPIEEREETTSRPWPFALSDGLAERL RTGAADIGTTMDGWARAGAAEPEPGDVRAGSLVARALALISDPSFGALPDMPDDRLLALL KDKARRALRMQRMNATALQRGADLNRAGEADGAELGDDARRRRDERDFDLVAGVLRPIPA MSSPQAEAGTRFHAWAERFVRAGIDDDGAARARMVADVEHALADDADLDADARRLLQWQR RLVDSPWASRMPSDAEESIVVAVDGIDNLVQGKLDAVFVGGLDPDDATKRFTVVDWKTGR RPRKAKDVEEKLRQLDFYRLMLAKARGVPLEAVDGALYYVSEADEADRQIDAAPKDEAAI VREIHEGIAFDGDDDGAAD NT seq 4560 nt NT seq  +upstreamnt  +downstreamnt atggacacgcagcacacgtcaacggacgaaccgcaacagcagccgccgaggaggacgaag ccgaagaagacgccgagcccccagcagcagaagattatcgacgcgccgaaggacgacgac ctgctcgtcgtcgccggcgccggcagcggcaagaccttcacgatgaccgaacgcatcatc agattcatcgacgacggcgtgccgcccgagcacatcctcggcctgaccttcacgaggaag gccgcctccgaactgctcacgcgcgtctcggcggccgtggccgaacagacgaagcaggcg aataggccggaacagccggaacggtcgaagaagtcgatgttcatgaaaccggacgtgtac acctacgacgcgttcttccagtcgatcgtgcgccagtacgggctgctcgtcggcttcgac cagcagacgcagccgctgagcgaggccggcgcgcgccagctcatcgcgacgacggtcggc gagcacatggacgtcgtcagggacagcggcgtcgagttcacgcgcttcacggcgatcgtc gacgacgtcttcgcgctctcgtcgaacatcgcgagctcgatgatcggcggcgactgcgac agcgtcgacgacgcgattgcgcgcatccgcgcatgggaccgcaggttcctcgagctcatc gacaggatgggaatcgacttcgacgccgtgcccgacgaggagccgacggtgcccgacgtg agcgcgaaggcgaagcggctgagcaaataccagtacgaccgccgcgtcaaggcgaacggc gaaccgtacgcgcaggcggcgcgcacgaacgagaggatcgactactggcgcgaccacatc cagcagttccatatcaggcagatgcgtgacgcgaccgtcaaacgcgagctgctgctcacg ctcgtgcagctcgtcgcggacgcgaagcggcgcaaccacatggccgagttcagcgacttc acggtggccgcctaccagctcgtcacgcgcttcccgtcgatcggcgaacgctaccgcgcc cgctacacgcatgtgctgctcgacgaataccaggacacgtccacgacgcaggcgatgctg ctcgcgaagctgttctgcgcccccgacggcagatcggccgtcaacgccgtcggcgacccg ttccagtcgatctacgcgtggcgcggcgcgagcccgggtgccttccgcctgttccagcgc tccttcggcctgcccgacgactacgagccgcgcgcattgtccgagacgcggcgcaactcc gtcgtcgtgctcgccgccgcgaaccatctgacggccgcgctgcgcgaacgcaggcgcgac ggcagcagcgtgcaggtgcacgaggtggacgtgcatacgctgtcgaacgtgagggacggc agcgccgaggtgcacgagggcacggtcggcgtgctcggctacgcgacgcgcggccaggag atcgacggcgtcgtgcgtttcgcgaagcacgcgatcgccaaacacgaacacgaggacgcc gaacgcgtcgcgcgcggcgaggagccgcggggcacgaagccgcacgtcgccgtgctgttc cgcggcaagacgcagattccgtatttccaggccgcgctcgaggaggcggggctgacgacc ttcgccgtcggcacgtcgtcgctgctcgaacagccggaggtgctcgacgtgctcgcgctg atgcacgtcgtcgccgaccgctccgacgcggcgtcgctgatgcggctgctcgcgacgccg cgcttcggcctgggcgccgccgacctgcgcgcgctcgcgcgtctggccgacgaacgcaac gtcgactaccgctaccgcgcgctcgtcgaggcgggcgtcgtcggcagggacaacgcggac gcggcgacgcgccggcgcgtcgtgcgcgagcatgcgcgcgaggtgccgaacgccgtcttc gccgccgacctgctgatggacgacgacgccgacgagacgatcgaacaagcgcatatctcg aaggccggcaaacgcgcgctgcaccacgccggcgccgtgctgcgccgcgtgcgccaggtc gcctacggcccgatcgaggaggtcatgcgcgccgccgtcgaggcgctcgacctcgacatc gacatgctcgtcgccgccgccgaacgccgacgccgcgcgggggagggcggcgacgcggcg aacgcgacggcgacgcgcgcatcgatcgacgcgctgctgcgcaccgtgcgcacctatgtg caggagatcgcgacgatgcagacgccgacgctgcgcggctacctgtcgtggatcgacgca cagcgcaacgtcgacgaaggcgccgcgccgatgccggacacacccgtcgacgtcatcctg atgacggtgcaccagtcgaagggcctcgaatgggacgccgtcgccgtcgtcggtctgcag gccaccgcgttcccgtccaaccagggcgaacgactcaaggtcgactacgtcagccatccg ggcgtcacgtcgccggacgacggggacggcccgtccggcgagtggacggctcccgactac ctggcgaaggcgcacacgtggatcaccgacccggccgccgtgccggtgccggtgcgctcc gacgccgcgatcctgccggccttccccggcaacgcgcgcaaggccgccgaatcgaacgac tacgacccgatcgccgcgctcggcgccgatgacgaggtcgggctgctcgacgacgacgtg ttcggcagcctgcgcgaatacacgatcgtcaacgacgacggcttcccgcgcaacgccgac gcgctgtggggcgaggccgaactgtggacgatgccgcagaccgaggagttcggccgacgg ctgtacgccgacgaacgccgcctgatgtacgtggcgctgacgcgcgcccgcgacgaggcg ctgctcacctacagcgaggacgcgtcgacggcgcgcacgccggacgacgtcgtctcgccg cgcacggccgccgcggcgcatgctgtcgcctgcgccgccggctacgccgcatgggacgac ccgtcggcgcgcgacgtcgtcgtgccctacaagtcgtcgatgttctggagggaggtccac gagtcgctgctcttcgacgcctccagacgcgatgtccacgagcgcgtcgtccccgccgac cacgtcgtcgccgccgtccgcgcggcgcgcgaaggcgagacgggggccgaggccgccgcg ctcgacgcgcagtggacgcacgcgatgcaccgccctgcgctcatcgcccgctacaacacg gcgcgcgccgccgaggagcaggtggcgcgggcgaagcgcgcgctcgagcgggcgcaggag gagggccgccccaaggaggagctcggcgcgctcaaggaacgcctgcacgagcttgagcag gacatgtacgaccatgcgttcacgctcgcggccgacgaggtcggcgacgacgcgccggcg acgtggacgctcgacgagatcggcgaggcgcgccccgccggctacttcgccggcgagcac gcgcgcgatttcgccgacgccgtcgtcggcgacgcgtggaacacgccgatcgaggagcgg gaggagacgacgtcgcggccgtggccgttcgcgctgagcgacggactggccgaacggctg cgcaccggcgccgcggacatcggcacgacgatggacggctgggcgcgcgccggcgccgcc gaacccgaacccggcgacgtgcgcgccggatcgctcgtcgcgcgcgcattggcgttgatc agcgacccgagcttcggcgcgctgccggacatgccggacgaccggctgctggcattgctc aaggacaaggcgcgccgcgcgctgcgcatgcagcgcatgaacgcgacggcgctgcagcgc ggcgccgacctgaaccgcgccggcgaggcggacggcgcggaactcggcgacgacgcgcgc cgccgccgcgacgagcgcgacttcgacctcgtcgccggcgtgctgcgcccgatcccggcg atgagctcgccgcaggccgaggccggcacgcgtttccacgcctgggccgaacgcttcgtg cgcgccggcatcgacgacgacggcgccgcgcgcgcccggatggtcgccgacgtcgagcat gcgctcgccgacgacgccgacctggacgccgacgcgcgccgcctcctgcaatggcagcgt cggctcgtcgattcgccgtgggcgtcgcgcatgccgtccgacgccgaggagtcgatcgtc gtcgcggtcgacggcatcgacaaccttgtccagggcaagctcgacgccgtcttcgtcggc ggcctcgaccccgacgacgcgacgaagcgcttcaccgtcgtcgactggaagaccggacgc cgtccgcgcaaggcgaaggacgtcgaggagaagctgcgtcagctcgacttctaccggctc atgctcgcgaaggcgcgcggcgtgccgctcgaggccgtcgacggcgcgctgtactacgtc tccgaagccgacgaggccgaccgccagatcgacgccgcgccgaaggacgaggcggcgatc gtccgcgagatccacgaaggcatcgccttcgacggcgacgatgacggcgccgccgactga

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