Bifidobacterium choerinum: BcFMB_00865
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Entry
BcFMB_00865 CDS
T05748
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcho
Bifidobacterium choerinum
Pathway
bcho03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BcFMB_00865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcho03021
]
BcFMB_00865
03400 DNA repair and recombination proteins [BR:
bcho03400
]
BcFMB_00865
Enzymes [BR:
bcho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BcFMB_00865
Transcription machinery [BR:
bcho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BcFMB_00865
DNA repair and recombination proteins [BR:
bcho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BcFMB_00865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
PLC-beta_C
Ac81
Cortex-I_coil
PEARLI-4
Focal_AT
Motif
Other DBs
NCBI-ProteinID:
ATU19722
UniProt:
A0A2D3D2J4
LinkDB
All DBs
Position
complement(225367..229395)
Genome browser
AA seq
1342 aa
AA seq
DB search
MLDVNAFDKLKIGLATADDIRGWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLGI
APKELEKVIYFASYMVTKVDEEQRHKDLPDLQDEFDNEVKNLERRRDNEIEARAKKVEAD
LAELEADGEVKGSARTKLRNGAERDMAAIRQRYDDQIARIGAVFDKFKNLKPGDMENDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLEAAAKELREEIETGTGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DAEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMLASDNILKPADGHTVTMPSQDMILGLYYLSTVVDGAKGQG
RVFSSLDEAQMALDRHEIDMQAKVLIRLPEDFVLPKEWEPGEVKVVDPEPGSPDVVKEER
FTDGTVLFATSLGRILFNETLPVNYPFINEQCPKGKLSKIVDDIATRYSTQQVAAVLDAL
KDLGFTRAPWSGVTMAFSDIVAPPEREEIIKGYEAEAAKVNSQYDLGLLTEDERRQELIN
LWTECTDKVAEAMRENFHDDNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQEVIVREEDCGTKRG
LTMKVAERDEDGNLVLVKAADGGPYSRLLAADVIDPADGKTVLYHAGDALSMDVLNDLVA
HGVEEVKGRSVLTCESKRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAQVAGTVRIEDSERGRQVFIKPDDGS
EEEAYPVTRRAPLLVKDGEHVEAGTQLIEGSVDPKKILRILGPNAAQKNIVEEVHNVYRS
QGVDIHDKHIEVIVHQMLRRITVIDSGDTTLLPGELVDRARFTEANRAAVANGGKPAAGR
PELMGITKASLATDSWLSAASFQETTRVLTEAALNEKEDDLKGLKENVIIGKLIPAGTGL
ARYRNAVVEPDKAIRDTIYPNFGLGEDGLGGEFGDGDMSDVDFSNIDFGDLKLGDDFNPD
DFLDDNGGQEDLGGDLGDDFKF
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaaactgaaaatcggtctggccaccgcggacgacatc
cgtggctggagctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacggcctgttcggcgagcagatcttcggaccgacgcgcgactgggagtgc
gcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcgtgtgcgagcgctgcggcgtc
gaggtgacgcgcagccgcgtgcgccgcgagcgcatgggccacatcgagctggccgcgccg
gtcacgcacatctggttcttcaagggtgtgccgagccgtctgggctacctgctcggcatc
gcgccgaaggagctcgagaaggtcatctacttcgcgtcctacatggtcacgaaggtcgat
gaggagcagcgtcacaaggatcttccggatctccaggacgagttcgacaacgaggtgaag
aacctcgagcgccgtcgtgacaacgagatcgaggcgcgcgcgaagaaggtcgaggccgat
ttggccgagctcgaggccgacggcgaggtcaagggcagcgcccgcacgaagctgcgcaac
ggcgccgagcgcgacatggcggcgatccgccagcgctacgacgaccagatcgcacgcatc
ggcgcggtcttcgacaagttcaagaacctcaagccgggcgacatggagaacgacgtcgac
ctgtggcgtgagatggaggatcgctacggcgactacttcgagggctgcatgggcgccgag
gcgatcaagaagcgcctgcaggacttcgacctcgaagccgccgcgaaggaactgcgcgag
gagatcgagaccggcaccggccagcgcaaggcccgcgccctcaagcgcctcaaggtcgtc
aacgcgttcctgacgaccggcaacaagccggaggcgatggtcctcgacgtgatcccggtc
atcccgccggacctgcgcccgatggtgcagctcgacggcggccgcttcgcgacctccgac
ctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgactcaagcgactcatcgag
ctcggcgccccggagatcatgctcaacaacgagaagcgcatgctccaggaggccgtcgac
tcgctgttcgacaacggccgccgcggccgcccggtcaccggcgcctcgaaccgtccgctc
aagtcgctgtctgacatgctcaagggcaagcagggccgtttccgccagaacctgctcggc
aagcgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgtcgctgcgcatgcac
cagtgcggcctgccgaagccgatggcgctcgagctgttcaagccattcgtcatcaagcgc
ctcgtcgacctcaactacgcgcagaacatgaagagcgcgaagcgtctcgtcgaccgcggc
gacgccgaggtctggggcgtgctcgaggaggtcatctccgagcatccggtcctgctcaac
cgtgcgcctacgctgcaccgtctgggcatccaggccttcgagccgatcctcgtcgaaggc
aaggccatccacctgccgccgctcgcctgcgccgcgttcaacgcggacttcgacggcgac
cagatggcggtccatctgccgctgagcgccgaggcgcaggccgaggcccgctcgctgatg
ctggcctccgacaacatcctcaagccggccgacggccacaccgtcacgatgccgtcgcag
gacatgatcctgggcctgtactacctgagcaccgtcgtcgacggcgcgaagggccagggc
cgcgtcttctcgtcgctcgacgaggcgcagatggcgctcgaccgccacgagatcgacatg
caggccaaggtgctcatccgcctgcccgaggacttcgtgctgccgaaggaatgggagccg
ggcgaggtcaaggtcgtcgacccggagccgggcagcccggacgtcgtcaaggaggagcgc
ttcaccgacggcaccgtgctgttcgcgacgtcgctcggccgcatcctgttcaacgagacg
ttgccggtgaactacccgttcatcaacgagcagtgcccgaagggcaagctctcgaagatc
gtcgacgacatcgcgacgcgctactcgacgcagcaggtcgccgccgtcctcgacgcgctc
aaggacctcggcttcacgcgtgcgccgtggtcgggcgtcacgatggccttctcggacatc
gtcgccccgccggagcgcgaggagatcatcaagggctacgaggcggaggccgccaaggtc
aacagccagtacgacctcggcctgctcaccgaagacgagcgccgtcaggagctcatcaac
ctgtggaccgagtgcaccgacaaggtcgccgaggcgatgcgcgagaacttccatgacgac
aacaacgtgaacatcatggtgcagtccggcgcacgaggcaactggatgcagatccgtcag
attgccggcatgcgaggcctcgtggcgaacccgaagggtgagatcatcccccgaccggtc
aagtcgaactaccgcgacggcctgtccgtgctcgagtacttcatctcgcagcacggcgcg
cgcaagggtctggccgatacggcactgcgtacggcggaatcgggctacctgacccgtcga
ctcgtcgacgtctcgcaggaggtcatcgtccgcgaggaggactgcggcacgaagcgcggc
ctgacgatgaaggtcgccgaacgcgacgaggacggcaacctcgtgctcgtcaaggcggcc
gacggcggtccgtactcgcgtctgctcgcggccgacgtcatcgacccagccgacggcaag
accgtgctctaccacgccggcgacgcgctgtcgatggacgtgctcaacgacctcgtcgcg
cacggcgtcgaggaggtcaagggccgttcggtgctcacctgcgagtcgaagcgcggcgtg
tgcgcgaagtgctacggctggtcgctcgcgacgaacaagctcgtcgacgtcggcgaggcg
gtcggcatcgtcgccgcgcagtcgatcggcgaaccgggcacgcagctgacgctgcgttcg
ttccactccggcggcgtcgcgtcggcctcggatatcacgcagggtctgccgcgtgtcacc
gagctcttcgaggcgcgtacgccgaagggcgaggcgccgatcgcgcaggtcgccggcacc
gtgaggatcgaggacagcgaacgcggtcgtcaggtcttcatcaagcccgacgacggcagc
gaggaggaagcctatccggtgacgcgtcgcgcgccgctcctcgtcaaggacggcgagcac
gtcgaagctggcacgcagctgatcgaaggttcggtcgacccgaagaagatcctgcgcatc
ctcggaccgaacgccgcccagaagaacatcgtcgaggaggtgcacaacgtgtaccgctcg
cagggcgtcgacatccatgacaagcacatcgaggtcatcgtccaccagatgctgcgtcgc
atcaccgtcatcgattccggtgacacgacgctgctgccgggcgaactcgtcgaccgtgcg
cgcttcaccgaggcgaaccgcgcggccgtcgccaacggcggcaagccggcggcgggccgt
ccggagctgatgggcatcacgaaggcgtcgctcgcgaccgattcgtggctgtccgcggcg
tcgttccaggagacgacgcgcgtgctcaccgaagcggcgctcaacgagaaggaagacgac
ctcaagggcctcaaggagaacgtcatcatcggcaagctcatcccggccggcaccggactg
gcgcgttaccgcaacgccgtcgtcgagccggacaaggcgatccgcgacacgatctacccg
aacttcggtctcggcgaggacggtctcggcggcgagttcggcgatggcgacatgtccgac
gtcgacttctcgaacatcgatttcggcgacctcaagctcggcgacgacttcaacccggac
gacttcctggacgacaacggcggtcaggaggacctcggcggcgatctcggcgacgacttc
aagttctga
DBGET
integrated database retrieval system
