Bifidobacterium choerinum: BcFMB_03455
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Entry
BcFMB_03455 CDS
T05748
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bcho
Bifidobacterium choerinum
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcho03032
]
BcFMB_03455
03400 DNA repair and recombination proteins [BR:
bcho03400
]
BcFMB_03455
Enzymes [BR:
bcho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BcFMB_03455
DNA replication proteins [BR:
bcho03032
]
Prokaryotic type
DNA Topoisomerases
BcFMB_03455
DNA repair and recombination proteins [BR:
bcho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BcFMB_03455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Stm1_N
Motif
Other DBs
NCBI-ProteinID:
ATU20139
UniProt:
A0A2D3D4R6
LinkDB
All DBs
Position
907803..910697
Genome browser
AA seq
964 aa
AA seq
DB search
MTAGSKLVIVESPAKAKKIGGYLGDGYTVLASVGHIRDLAQPSQVPADQKARFGKFGVDV
DDGFKPYYVVGADKKKTVAELRAALKDADELFLATDEDREGEAIAWHLVQTLKPKVPVKR
MVFHEITPEAIRASLEHTREVDGHMVDAQETRRVLDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFVRAPYWDVVAQLQAPDALGADVAFDARLTAVDGHRVAGSKDF
TSRGELTEAARRDGVRQLGQADADAIAAALASAPFRVADVEEKPYRRRPQPPFTTSTMQQ
AAGNRLGMSSRQTMRAAQTLYENGYITYMRTDSVTLSQEAIHAARESVAREFGERYLSDG
PKQYATKTAGAQEAHECIRPAGSHFRDPAQLAGSLPPDQLRLYTLIWQRTLASQMADATG
STATARFVADAGDRGETTFQASGTVIEFPGFLRVLGEHRKGAKDDETSLPPMAAGDVLQA
RDVKADGHETQPPARYTEASLVKTLEAKEIGRPSTYASIISTIIDRKYVYERGRALIPSW
LAFAVTKLLETKFPKYVDYQFTADMENGLDEIAHGRDTGRDWLTAFYFGTGKDAAKNADE
VHEGLQQQVAQLGEIDARAINTIEIGDGINVRVGRYGPYLEDTKHLDDKGNPKHASIPDT
LAPDELTVAEAHRLIDENAGGPRVLGTDPATGGTVELRNGRFGPYIALVEPGSDARPKMA
SLFKSMTPETITLADALRLLSLPRLVASYDETDEKTGETGTTKILANNGRYGPYLTRERA
DGSSETRSLENEDMIFTVTEQQARDLFAQPKYGRGRRAAKPPLRELGNDPTTNKPVTIKE
GFYGAYITDGETNRSLPKQYDPKTISAEDAFRLLAEKRAAGPAKRRGRKTKTAKAAKPAK
TVSPAQAAREERRRKVREFADLGWPNARIAREIGSTPATIKSDLDYLTEHEGYVRPAVVP
RTKR
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaggcagcaagctcgtgatcgtcgagtccccggcgaaggcgaagaagatcggc
ggctacctcggggatggatacaccgtgctcgcttcggtgggccatatccgcgaccttgcc
cagccgagtcaggttcccgccgaccagaaggcgcgcttcggcaagttcggcgtcgatgtg
gacgacggcttcaagccgtactacgtcgtcggcgccgacaagaagaagacggtcgccgaa
ttgcgcgccgcgctcaaggacgccgacgagctcttcctcgcgaccgatgaggaccgcgaa
ggcgaggcgatcgcctggcatctcgtgcagacgctcaagccgaaggtgccggtcaagcgt
atggtgttccacgagatcacgcccgaggcgatccgcgcatcgctcgaacatacgcgcgag
gtcgacggccacatggtcgacgcgcaggagacgcgccgtgtcctcgaccgcctctacggc
tatgaactgtcgccggtgctgtggcgcaaggtcggcccgggactgtccgcaggccgcgtg
cagtcggtcgccacacgtctgatcgtcgaacgcgaacgcgaacgcatggccttcgtgcgc
gcgccgtactgggacgtcgtcgcgcagctgcaggcgccggacgcgctcggcgccgacgtc
gccttcgacgcgcgcctgaccgccgtcgacggccatcgcgtcgccggatcgaaggacttc
acgtcgcgcggcgaactcaccgaggccgcgcgcagggacggcgtgcggcagctgggccag
gccgatgccgacgcgatcgccgccgcgctcgcgtccgctccgttccgcgtcgccgacgtc
gaggagaagccgtaccgccgccgtccacagccgccgttcacgacgtcgacgatgcagcag
gccgccggcaaccgtctcggcatgtcgtcgaggcagacgatgcgcgccgcgcagacgctg
tacgagaacggctacatcacctatatgcgtaccgattcggtcacgctcagccaggaggcg
atccacgccgcgcgcgaatcggtcgcgcgcgagttcggcgagcggtatctgtccgacggc
cccaagcagtacgcgacgaagacggccggcgcgcaggaggcgcacgaatgcatccgaccc
gccggctcgcacttccgcgacccggcgcaactcgccggttcgctgccgccggaccagctc
aggctgtacacgctcatctggcagcgcacgctcgcctcgcagatggccgacgcaaccggt
tcgacggccacggcgcgcttcgtcgccgacgccggcgaccgcggcgagacgacgttccag
gcctccggcaccgtcatcgagttccccggcttcctgcgcgtgctcggcgagcaccgcaag
ggcgcgaaggacgacgagacgtcgctgccgccgatggccgccggcgacgtgctgcaggcg
cgcgacgtgaaggcggacggccatgagacgcagccgccggcgcgctacaccgaggcgtcg
ctcgtcaagacgctcgaggcgaaggagatcggacgaccctccacctatgcgagcatcatc
tcgacgatcatcgacaggaaatacgtgtacgagcgcggccgcgcgctcatcccgtcgtgg
ctcgcgttcgccgtgacgaagctgctcgagacgaagttccccaagtacgtcgactatcag
ttcacggcggacatggagaacggcctcgatgagatcgcgcacggcagggacaccggccgt
gactggctcaccgccttctacttcggcaccggcaaggacgcggcgaagaacgccgacgaa
gtgcacgaaggcctgcagcagcaggtcgcgcagctcggcgagatcgacgcgcgtgcgatc
aacacgatcgagatcggcgacggcatcaacgtgcgcgtcggccgctacggcccgtatctc
gaggacacgaaacacctcgacgacaagggcaacccgaagcatgcgtcgatcccggatacg
ctcgcgccggacgagctcaccgtcgccgaggcgcaccggctcatcgacgagaacgccggc
ggcccgcgcgtgctcggcaccgacccggcgaccggcggcaccgtcgaactgcgcaacggc
cgcttcggcccgtacatcgcactcgtcgagccgggctcggacgcgcgtccgaagatggcg
tcgctgttcaagtcgatgacgccggagacgattacgctcgccgacgcgctcaggctgctg
agcctgccacgcctcgtcgcgtcctatgatgagaccgacgagaagaccggcgagaccggc
acgacgaagatcctcgcgaacaacggccgctacggcccgtatctgacgcgcgaacgcgcc
gacggctcgagcgagacgcgttcgctcgagaacgaggacatgatcttcacggtgaccgaa
cagcaggcgcgcgacttgttcgcgcagccgaagtacggccgcggcaggcgtgccgcgaag
ccgccgctgcgcgagctcggcaacgacccgacgacgaacaagccggtgacgatcaaggaa
ggcttctacggcgcctacatcaccgacggcgagacgaaccgttcgctgcccaagcagtac
gacccgaagacgatttctgccgaggacgcgttccgtctgctcgccgagaagcgtgcggcc
ggcccggccaagcgccgcggccgcaagacgaagacggcgaaggccgcgaaaccggcgaag
acggtgagccccgcgcaggccgcccgcgaggagcgccgcaggaaggtacgcgaattcgcc
gatctggggtggccgaacgcgcgcatcgcacgcgagatcggttcgacgcccgcgacgatc
aagtcggacctcgactatctgaccgaacacgaaggctacgtgcgtccggcggtcgtgccg
aggacgaagcgctga
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