Bifidobacterium choerinum: BcFMB_03845
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Entry
BcFMB_03845 CDS
T05748
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bcho
Bifidobacterium choerinum
Pathway
bcho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BcFMB_03845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcho03019
]
BcFMB_03845
03009 Ribosome biogenesis [BR:
bcho03009
]
BcFMB_03845
Enzymes [BR:
bcho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BcFMB_03845
Messenger RNA biogenesis [BR:
bcho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BcFMB_03845
Ribosome biogenesis [BR:
bcho03009
]
Prokaryotic type
rRNA processing factors
BcFMB_03845
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ATU20203
UniProt:
A0A2D3D539
LinkDB
All DBs
Position
1008568..1011414
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AA seq
948 aa
AA seq
DB search
MRDAGAANASVELKVEEHAPLFREPSVPALPASKPAAAITSSKDDKDSADGEPKRRRTRA
TSSSRSRSAADVVDALDDVVDNADRDANRESGRTSHRRASRPMTSLLFQEPVIPLPGDED
DDRRSRRNGADDDDEEPAPRSRRRRASASDDENESAPRRRSRRASSAADEDDEEPTTSRR
SRRAKSQDDDEEPAPRSRRRSRRASAAHESSDADDVTETSEETTVRDYPDGEEETTSTRR
RSRRSNRRLNAQERRAAAEVEQIEEDLVLDDITYAPIDDAIARNAKKKANDEHGEDEDEE
EETSMRTRRRRRRRSQESDAEPTKSNDKNADKDNEENNEEDEETTVTRRRRRRRGGKNAE
EETTTHRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQNQLLEQDFLARRENVDR
LMVVRQRERHTQISVLEDNVLVEHYVSDIQEVATVGNIYIGRVQNVLPSMEAAFVDIGQA
RNGVLYAGEVNWDTTRLEGQPRRIELAFRSGDPVLVQVTKDPIGHKGARLTSQVTLAGRF
LVLVPLGGMTGVSRKLSSRERSRLKSIVSKVAPKDMGVIIRTAAEGATEEAIVKDMEQLT
HQWEQIQTKFEEFRHGKRPKLLQGEPDMAIRVVRDIFNDDFRKMIVEGDSVYERIEQYLD
TMAPDLSAKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTI
DVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLR
RLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFIVHDEPTIS
SDYDDPYALKGGDPFVKTNKHGHGSEAHAGGSGSHGSHGGSAGHGSSSGGRGAHASVPQG
SSDAVKQKLAQIAAAAVAATNAEEEIHDALNDAEHLEVQIEHIEENKD
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtgacgccggcgccgcgaacgcctccgtcgagctcaaggtggaggagcacgcgccg
ctgttccgcgagccgagcgtgcccgcattgcccgcgtcgaagccggccgcggcgatcacg
tcgtcgaaggacgacaaggattccgctgatggcgaaccgaagcgtcgccgtacgcgtgcg
acgtcgtcgtcgcgcagccgttccgcagccgacgtcgtcgacgcgctcgacgacgtcgtc
gacaatgccgaccgtgacgccaatcgcgaatccggccgcacgtcgcaccgccgcgcctcg
cgtccgatgacgtcgctgctgttccaggagcccgtcatcccgctgccgggcgacgaggac
gacgaccgccgctcccgccgcaacggcgctgatgacgatgacgaggagccggcgccgcgc
agccgtcgccgtcgtgcctccgcctccgacgatgagaacgagtccgcgccgcgccgccgt
tcgcgtcgcgcgtcgtccgccgccgacgaggacgatgaggagccgacgacgtcgcgtcgc
tcgcgccgcgcgaagtcgcaggacgatgacgaggagccggcgccgcgcagccgccgccgt
tcgcgtcgtgcatcggccgcgcatgagtcgtccgacgccgacgacgtgaccgagacgagc
gaggagacgaccgttcgcgactaccccgacggcgaagaggagacgacgtcgacgcgccgc
cgttcgcgcagatcgaaccgtcgtctcaacgcgcaggagcgtcgcgcggcggccgaagtc
gagcagatcgaagaggacctcgtgctcgacgacatcacgtatgcgccaatcgacgacgcg
atcgcgcgcaacgcgaagaagaaggcgaacgacgagcacggcgaggacgaggacgaggag
gaggagacgtcgatgcgcacgcgtcgccgtcgccgtcgccgctcgcaggagtccgacgcc
gagccgacgaagtcgaacgacaagaacgccgacaaggacaacgaagagaacaacgaggaa
gacgaggagacgacggtcacgcgtcgtcgccgccgtcgccgtggcggcaagaacgccgaa
gaggagacgacgacgcaccgctcgcgcaagcagcagtacatcgacgagatcaccgacgtc
gaaggctccacgcgtctcgaggcgaagaagcagcgtcgtcgtgacaaccgtcgcgagcgc
agccggcagaaccagctgctcgagcaggacttcctcgcccgccgcgaaaacgtcgaccga
ctgatggtcgtgcgtcagcgcgaacgccatacgcagatctcggtgctcgaggacaacgtg
ctcgtcgagcattacgtctccgacatccaggaggtcgcgacggtcggcaacatctacatc
ggccgtgtgcagaacgtgctgccgagcatggaggcggccttcgtcgacatcggccaggcg
cgcaacggcgtgctgtacgcgggcgaggtcaactgggacacgacacgtctcgaagggcag
ccgcggcgcatcgaactcgcgttccgctccggcgatccggtgcttgtgcaggtgacgaag
gatccaatcggccataagggcgcgcgtctgacgagtcaggtgacgctcgccggccgcttc
ctcgtgctcgtgccgttgggcggcatgaccggcgtcagccgcaagctgagcagccgtgag
cgcagccgcctgaagtcgattgtgtcgaaggtcgcgccgaaggacatgggcgtcatcatc
cgcacggccgcggagggcgccaccgaagaggcgatcgtcaaggacatggaacagctcacg
catcagtgggagcagatccagacgaagttcgaggaattccgccacggcaagcgtccgaag
ctgttgcagggcgagccggacatggcgatccgcgtcgtgcgcgacatcttcaacgacgac
ttccgcaagatgatcgtcgaaggcgacagcgtctatgagcgcatcgaacagtatctggat
acaatggcgcccgatctgagcgcaaagctggagaagtgggatccggccgagcacgaaggc
aaggacgtgttcgacaagtggcagatcgattcgcagctgcgcaagggcatggaacgtcag
gtgtacctgccgtccggcggatcgatcgtcatcgaccgcaccgaggcgatgacgacgatc
gatgtgaacaccggccggttcatcggccgtggcaagtcgctcgaggagacggtgacgcgc
tgcaacctcgaggcgagcgaggagatcgcacggcagctgcgtctgcgtgacatcggcggc
atggtcatgatcgattacgtggacatggtgatgccggcgaaccgcgacctcgtgctgcgg
cgtttggtcgagtgcctggcgcgcgaccgcacgaagcatcaggtggccgaggtcacgtcg
ctgggcttggtgcagatgacgcgcaagcgcatcggtcagggactcgtcgaggcgttctcc
gaggaatgcccgacatgcaaggggcgcggcttcatcgtgcacgacgaaccgacgatctcc
agcgactacgacgacccgtatgcgctcaagggcggcgaccccttcgtcaagacgaacaag
cacggccacggcagcgaggcgcacgccggcggttccggttcgcatggttcgcacggcggt
tccgccggacatggctcttcgagcggcggccgcggcgcgcatgcgtcggtgccacagggg
tcgtccgatgccgtcaaacagaagctcgcgcagatcgcggcagccgctgtggccgcgacg
aacgccgaggaggagatccacgacgcgctcaacgacgccgaacatctggaggtgcagatc
gagcacatcgaggagaataaggactag
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