Bifidobacterium choerinum: BcFMB_03995
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Entry
BcFMB_03995 CDS
T05748
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bcho
Bifidobacterium choerinum
Pathway
bcho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BcFMB_03995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcho03019
]
BcFMB_03995
03016 Transfer RNA biogenesis [BR:
bcho03016
]
BcFMB_03995
Enzymes [BR:
bcho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BcFMB_03995
Messenger RNA biogenesis [BR:
bcho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BcFMB_03995
Transfer RNA biogenesis [BR:
bcho03016
]
Prokaryotic type
tRNA degradation factors
BcFMB_03995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
BUD22
KH_2
PCB_OB
MUG2_C
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ATU20228
UniProt:
A0A2D3D554
LinkDB
All DBs
Position
1057413..1060061
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AA seq
882 aa
AA seq
DB search
MEGPEIKAVEAVIDNGSYGKRTVRFETGRLAQQADGAVAAYLDDDSMVLSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ
VVETILAVNPEDSYDMIALNAASASTLISGLPFEGPVGGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVVDNGDVAIAMIEAGAGKNAWNLIYDEGQTKPDEEVVAGGLEAAKPFIKV
LCDAQNELKKIAAKETRDFPLFPEYTEELYNRIDEIAHADLDEALSIAEKLPRQERISEI
KQKVRDTLALEFTDMDDAEKEKELGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSA
EVGIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQTKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLDAGVPLKAPVAGIAMGLVSGDVDGQHVYKTLTDILGAEDAFGDMDFKVAGTADFITAL
QLDTKLDGIPADVLAGALKQAHEARTTILEVINECIDGPAEMSPFAPRIITTTVPVDKIG
EVIGPKGKMINQIQEDTGAEITIEDDGTVYIASEGGEAAQKAKEIIDQIANPHVPQAGET
YNGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLADGERIDSVEDVLKEGDTVEVVVQGVD
DRGKISLAIPGYENQESNAGAARRDDRRRDDRDDRPRRPRRRDDDDRDDRPRRRRDDRDD
RRADRDYDDRPRRRDYDDDDYDDRPRRRRSDDRDRDYDDRPRRSRRHDDDRDRDDRPRRR
RSDDHNPRYAADENYDEYRAGREERHERPRRRVRRDFDPFED
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatcaaggcggtagaagccgtcatcgacaacggttcgtatggcaag
cgcacggtgcgcttcgaaaccggccgtctcgcccagcaggcggacggcgccgtcgccgcg
tatctggacgacgattcgatggtcctgtccaccaccaccgcgggcagcagcccgaaggag
aactacgacttcttcccgctcaccgttgacgttgaggagaagatgtatgccgcgggcaag
atcccgggctcgttcttccgtcgcgaaggccgcccgagctccgaggcgatcctggcgtgc
cgcatcatcgaccgcccgctgcgcccgttgttcccgcacacgctgcgcaacgaggtgcag
gtcgtcgagacgatcctcgcggtgaacccggaggattcgtatgacatgatcgcgctcaac
gccgcatcggcgtcgacgctgatctccggcctgccgttcgaaggcccggtcggcggcgtg
cgcctcgcgctcatcgacggccagtgggtcgcgttcccgcgctggagcgaacgcgagcgc
gccgtcttcgagatcgtcgtcgccggccgtgtcgtcgacaacggcgacgtcgcgatcgcg
atgatcgaggcgggtgccggcaagaacgcatggaacctcatctacgacgagggccagacg
aagccggacgaggaggtcgtcgccggtggcctcgaggccgccaagccgttcatcaaggtc
ctgtgcgatgcgcagaacgagctcaagaagatcgccgcgaaggagacgcgcgacttcccg
ctcttcccggagtacaccgaggagctctacaaccgcatcgacgagatcgcgcacgccgac
ctcgacgaggccctgtcgatcgccgagaagctgccgcgtcaggagcgtatctccgagatc
aagcagaaggtccgcgacacgctcgcgcttgagttcaccgacatggacgacgccgagaag
gaaaaggaactcggcaacgcgttcaaggagctgcagcgccagatcgtgcgccgccgcatc
ctcacgcaggactaccgcatcgacggccgtggcctgcgcgacatccgcacgctgtccgcc
gaagtgggcattgtgccgcgcgtgcacggctcggcgctgttccagcgtggcgagacgcag
atcctcggcgtcacgacgctcaacatgctcaagatggagcagcagatcgacgcgctgagc
ggcccgcagacgaagcgctacatgcacaactacgagatgccgccgtattcgaccggcgaa
accggtcgcgtcggttcgccgaagcgccgcgagatcggccacggcgcgctcgccgagaag
gcgatcgtgccggtgctgccgagccgagaggagttcccctacgcgatccgtcaggtctcc
gaggccatcggttcgaacggttcgacgtcgatgggttcggtgtgtgcgagcacgctgtcg
ctgcttgacgcaggcgtcccgctcaaggccccggtcgcgggcatcgcaatgggcctcgtc
tccggtgacgtggacggtcagcacgtctacaagacgctcaccgacatcctcggcgccgag
gacgccttcggcgacatggacttcaaggtcgccggcaccgccgacttcatcaccgcgctg
cagctcgacacgaagctcgacggcattccggccgacgtgctcgccggcgcgctcaagcag
gcgcacgaggcgcgcacgacgatcctcgaggtcatcaacgagtgcatcgacggcccggcc
gagatgagcccgttcgcgccgcgcatcatcacgacgacggtcccggtcgacaagatcggc
gaggtcatcggcccgaagggcaagatgatcaaccagattcaggaggacaccggcgccgag
atcacgatcgaggacgacggcaccgtctacatcgcctccgaaggcggcgaggccgcgcag
aaggcgaaggagatcatcgaccagatcgccaacccgcacgtgccccaggccggcgagacc
tacaacggcaaggtcgtcaagacgacgagcttcggcgccttcgtcaacctgacgccgggc
actgacggcctgctgcacatctcgcagatccgcaacctcgccgacggcgagcgcatcgac
tcggtcgaggatgtgctcaaggagggcgacaccgtcgaggtcgtcgtccagggcgtcgac
gaccgcggcaagatctcgctcgcgatcccggggtatgagaaccaggagagcaacgccggc
gccgcccgccgcgacgaccgccgccgcgacgaccgcgacgaccgtccgcgccgtccgcgc
cgccgtgacgacgacgatcgtgacgatcgtccgcgccgccgccgcgatgaccgcgacgac
cgccgtgccgaccgtgactatgacgaccgtccgcgccgccgcgactatgacgacgatgac
tatgacgaccgtccgcgccgccgccgttccgacgaccgtgaccgcgactatgacgaccgt
ccgcgccgttctcgccgccatgacgacgatcgcgaccgcgatgatcgtccgcgccgccgc
cgttccgacgaccacaacccgcgctacgccgccgacgagaactacgacgagtaccgtgcg
ggacgcgaggagcgtcacgagcgtccgcgccgccgtgtgcgtcgcgatttcgatcccttc
gaggactga
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