Bifidobacterium choerinum: BcFMB_04480
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Entry
BcFMB_04480 CDS
T05748
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
bcho
Bifidobacterium choerinum
Pathway
bcho03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BcFMB_04480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcho03021
]
BcFMB_04480
03400 DNA repair and recombination proteins [BR:
bcho03400
]
BcFMB_04480
Enzymes [BR:
bcho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BcFMB_04480
Transcription machinery [BR:
bcho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BcFMB_04480
DNA repair and recombination proteins [BR:
bcho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BcFMB_04480
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
ATU20304
UniProt:
A0A087AC03
LinkDB
All DBs
Position
1161812..1162807
Genome browser
AA seq
331 aa
AA seq
DB search
MLIAQRPTLTEESLNPQRSRFIIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSVRISGAL
HEFTTLPGVEEDVTEILLNIKGIVLTSEYDEPVVMYLRKSGKGEATAGDITPPAGVTIAN
PEMHIATLADDGELEIEFTVERGRGYVPAQMNKQDGDEIGRIPVDSIYSPVLKVSYKVEA
TRVEQRTDFDRLILDVETKPAISPRDAVASAGSTLVELFGLCRELNTQAEGVEVGPAPVV
EEADPEMAVPIEDLNLTQRSYNCLKREGIHTVGELVNHTEQDLLDIRNFGMKSIDEVKEK
LQSLGLSLKASPLGFDTSNLEGGTFFSPEDE
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
gtgcttatcgcacagcgtccgacacttaccgaggaatcgctcaaccctcagcgttcccgt
ttcatcatcgagccactcgagccgggcttcggctacacgcttggcaactcgcttcgccgt
accctcttgagctcgattccgggagcggcagtcacgtcggtgcgtatttccggtgccctg
cacgagttcaccactctgccgggagttgaggaagacgtcactgagatcctgctcaacatc
aaaggcatcgtgctcacgagcgaatatgacgagcccgttgtcatgtatctgcgcaagagc
ggcaagggcgaagccaccgccggggacatcaccccgccggccggcgtcaccatcgccaac
ccggagatgcacatcgcgaccctcgccgacgacggcgaactcgagatcgagttcacggtc
gagcgcggccgcggctacgtcccggcgcagatgaacaagcaggatggtgatgagatcggc
cgcatcccggtcgattccatctactcgccggtgctcaaggtgagctacaaggtcgaggcg
acgcgcgtcgaacagcgcaccgacttcgatcggctcattctggatgtggagaccaagccc
gccatctccccgcgcgacgccgtcgcgtccgcgggctcgacgctggtggagctcttcggc
ctgtgccgtgagctcaatacccaggccgagggcgtcgaggtcggccccgcccccgtcgtg
gaggaggccgatccggagatggccgtcccgatcgaggatctcaacctcacgcagcgcagc
tacaactgcctcaagcgcgagggcatccacacagtcggcgaactggtcaaccacacggag
caggatctgctcgacatccgtaatttcggtatgaagtccatcgatgaggtcaaggagaag
ctccagtccctgggactgtcgctcaaggcctcgccgctcggcttcgataccagcaacctc
gagggtggcaccttcttctcgcctgaggacgagtga
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