Bifidobacterium choerinum: BcFMB_04515
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Entry
BcFMB_04515 CDS
T05748
Name
(GenBank) tRNA pseudouridine(38-40) synthase TruA
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
bcho
Bifidobacterium choerinum
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bcho03016
]
BcFMB_04515
Enzymes [BR:
bcho01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
BcFMB_04515
Transfer RNA biogenesis [BR:
bcho03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
BcFMB_04515
Prokaryotic type
BcFMB_04515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
ATU20311
UniProt:
A0A087ABZ5
LinkDB
All DBs
Position
1165915..1166832
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AA seq
305 aa
AA seq
DB search
MTRLRIDLAYNGAAFHGWAVQPQGRTVQGTIEEALGRILGQRGGNGASGTPRLTVAGRTD
AGVHASHQVCHLDVDDAALARCVGHMRLTPVQALATRLSRMMPGDVAIHDVAVAPDGFDA
RFSALERTYVYRIADARTPWDPRLKDFVWRTDRELDVGRMNAAAALTLGLHDFGSFAIAN
PGGTTIRDVKTAYWARVPARPLLDTGMGERYRTPTAESGLLCFTIVADAFARNMVRSLVG
ACVQVGLGKRGVDWFAGKMAAPLREGSTGPIAPQGLTLEYIEYPADDELASRAEAIRARR
TLPEA
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtgacacgcttacgaatcgatctggcatacaatggcgccgccttccacggatgggcggtg
caaccccagggcaggaccgtgcaggggacgattgaggaggccctcggcaggatcctcgga
caacgcggcgggaacggcgcctccggcacgccgcggctgaccgtcgccggacgcaccgac
gccggtgtgcatgcctcgcatcaggtctgccatctcgacgtcgacgacgccgcgctcgca
cgctgcgtcggccatatgcggctcacgccggtgcaggcgctggcgacgaggctgtcgcgc
atgatgcccggcgacgtcgccatccacgacgtcgccgttgcgcccgacggattcgacgca
cgcttctccgcgctcgaacgcacctacgtgtaccgcatcgccgatgcgcgcacgccgtgg
gatccacggctcaaggacttcgtatggcgcaccgaccgcgaacttgacgtcgggcggatg
aacgcggccgccgcgctgacgctcggtctgcacgacttcggctccttcgccatcgcgaat
cccggggggacgacgatccgcgacgtgaagaccgcgtattgggcgcgggtgccggcgcgg
ccgctgctcgacaccggcatgggggagcgctaccgcacaccgaccgccgagtcggggctg
ctgtgcttcacgatcgtcgccgacgccttcgcgcgcaacatggtgcgttcgctcgtgggc
gcctgcgtgcaggtggggctgggcaagcgcggcgtcgactggttcgccggcaagatggcc
gcgccgctgcgtgaaggatcgaccggtccgatcgcgccgcagggactgacgctcgagtac
atcgaatacccggccgacgatgagctcgcgtcgcgcgccgaggcgatccgcgcccgccgc
acgctgccggaagcctga
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