Bifidobacterium choerinum: BcFMB_04545
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Entry
BcFMB_04545 CDS
T05748
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
bcho
Bifidobacterium choerinum
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bcho03016
]
BcFMB_04545
Enzymes [BR:
bcho01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
BcFMB_04545
Transfer RNA biogenesis [BR:
bcho03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
BcFMB_04545
Prokaryotic type
BcFMB_04545
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
ATU20315
UniProt:
A0A2D3D5E6
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All DBs
Position
1173121..1174113
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AA seq
330 aa
AA seq
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MGAQDGTLNGLFVVDKPQGVTSHDIVGAVRAAVHMRRVGHAGTLDPMATGVLVVGVGNAT
RLLNVIVDHTKTYAATIRFGQRTTTDDADGALVDMPRAAALPDVGMIRDVVSQKFHGTIE
QVPNAYSAIKVHGRRAYDLARAGEHVELEARPVTISRFDVGDARPAAAANGDAVLDVDVT
VTCSAGTYIRALARDLGEAFGCGAHLTRLRRLAVGGFTVDDPHVVTAHTETREYTKRDGE
RVTRARAVLDVPADDMAAHLIPMVDAVREAMPTVAVSRDEACDLRYGRWIAGHVDGTSAA
VVEDDGDVVAIVEQANGKTIRPTAVFPAAR
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
gtgggtgcgcaggacggcacgctcaacggtctgttcgtcgtcgacaagccgcagggcgtg
acgagccacgacatcgtcggcgccgtgcgcgcggccgtgcacatgcgccgcgtcggccac
gccggcacgcttgacccgatggccaccggcgtgctcgtcgtcggcgtcggcaacgcgacg
cggctgctcaacgtcatcgtcgaccatacgaagacctacgcggcgacgatccgattcggc
cagcgcacgacgaccgacgacgccgacggcgcgctcgtcgacatgccgcgcgcggccgca
ttgccggacgtcggcatgatccgcgacgttgtttcacagaagtttcacggcacgatcgag
caggtgccgaacgcctattcggcaatcaaggtgcacggacggcgcgcctacgatctcgcg
cgcgccggcgaacacgtcgaactcgaggcgcggccggtcacgatcagccgcttcgacgtg
ggcgatgcgcgcccggccgcggccgcgaacggcgacgccgtgctcgacgtcgacgtgacg
gtgacctgctcggccggcacctacatccgcgcgctcgcacgcgacctcggcgaggccttc
ggctgcggcgcgcatctgacgcggctgcgcaggctcgccgtcggcggcttcaccgtcgac
gacccgcacgtcgtgaccgcgcacaccgagacgcgcgagtacacgaaacgcgacggcgaa
cgggtgacgcgcgcacgcgccgtgctcgacgtgcccgccgacgacatggcggcgcatctg
atcccgatggtcgacgcggtgcgcgaggcgatgccgacggtcgccgtcagccgcgacgag
gcgtgcgacctgcgctacggacggtggatcgccggacacgtcgacggcacgagcgcggcg
gtcgtcgaggacgacggcgacgtcgtcgcgatcgtcgaacaggcgaacgggaagaccatc
aggccgaccgccgtgttcccggcggcacggtga
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