Bifidobacterium choerinum: BcFMB_05040
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Entry
BcFMB_05040 CDS
T05748
Name
(GenBank) ATP-dependent endonuclease
KO
K15255
ATP-dependent DNA helicase PIF1 [EC:
5.6.2.3
]
Organism
bcho
Bifidobacterium choerinum
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcho03032
]
BcFMB_05040
03029 Mitochondrial biogenesis [BR:
bcho03029
]
BcFMB_05040
Enzymes [BR:
bcho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
BcFMB_05040
DNA replication proteins [BR:
bcho03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
BcFMB_05040
Mitochondrial biogenesis [BR:
bcho03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA maintenance factors
BcFMB_05040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIF1
AAA_19
AAA_30
AAA_22
Pif1_2B_dom
AAA_24
AAA_16
Viral_helicase1
MeaB
NTPase_1
AAA_5
SH3_13
UvrD_C_2
nSTAND3
KdpD
AAA
TrwB_AAD_bind
NAT10_TcmA_helicase
AAA_11
Zeta_toxin
Herpes_Helicase
SLFN-g3_helicase
IstB_IS21
AAA_28
cobW
AAA_14
Zot
AAA_18
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ATU20387
UniProt:
A0A087AIA1
LinkDB
All DBs
Position
1288183..1289604
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AA seq
473 aa
AA seq
DB search
MRQAEALEIMDAGASVFLTGAPGAGKTYTLNEFIAAARRRGASVAVTASTGIAATHINGQ
TIHSWSGLGVANALTEQTLKNVRTRRRKALQATDVLVVDEVSMMHAWLFDMVDRAMRIVR
RDDRPFGGVQVVLSGDFFQLPPVSVGAHNRDVVAPSPEFVAERERYARAGRNPEGFITES
FAWDELDPVVCYLEEQHRQDDGALLGVLTDIREGHVTRQDRDLLVTRLGVRPPEGRTAVN
LFPVNRQADQLNDRMLAAIDAPAHTFHATCAGPANLVERLKRNMLAPDVLTLKEGAEVMA
VRNDADHQFVNGSLGTVRGFAPENKGGWPIVAFENGNIATMKPSDWELTDNEKTLAAVSQ
VPLRCAWAITIHKSQGMTLDAAVMDLKRTFAPGMGYVALSRVERLDGLFLNGVSNRMFDV
SDDAVRLDGTLRERSAQAARALHEDGASSIVAAQGHAQTAAGDDDEFAQDELF
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgcggcaggccgaggcgctcgagatcatggacgccggcgcgtccgtcttcctcaccggc
gcgcccggcgccggcaagacgtacacgctcaacgagttcatcgccgccgcgcgccggcgt
ggggcgagcgtcgccgtcacggcgtccacgggcatcgcggccacgcacatcaacggtcag
acgatccactcgtggagcggcctcggcgtcgcgaacgcgctcaccgagcagacgctcaag
aacgtgcgcacgcgccggcgcaaggcgctgcaggccaccgacgtcctcgtcgtcgacgag
gtctcgatgatgcacgcgtggctgttcgacatggtcgaccgcgcgatgcgcatcgtgcgg
cgcgacgaccgtccgttcggcggcgtgcaggtcgtgctctccggcgacttcttccagctg
ccgccggtcagcgtcggggcgcacaaccgcgacgtcgtcgcgccgagccccgaattcgtc
gccgaacgcgagcgctatgcgcgcgccggacgcaacccggagggcttcatcaccgaatcc
ttcgcatgggacgagctcgacccggtcgtctgctatctcgaggagcagcaccgtcaggac
gacggcgcattgctcggcgtgctgaccgacatccgcgaagggcatgtcacgcggcaggac
cgcgacctgctcgtcacgcgcctcggcgtgcggccgccggaggggaggacggccgtcaac
ctgttcccggtcaaccgccaggccgaccagctcaacgaccgcatgctcgccgcgatcgac
gcgcccgcgcacacgttccacgcgacctgcgcggggccggcgaacctcgtcgaacggctc
aaacgcaacatgctcgccccggacgtgctcacgctcaaggagggcgccgaggtcatggcc
gtgcgcaacgacgccgaccaccagttcgtcaacgggtcgctcggcaccgtgcgcggcttc
gcgccggagaacaagggcggctggccgatcgtcgcgttcgagaacggcaacatcgcgacg
atgaagccgagcgactgggagctcaccgacaacgagaagacgctcgccgccgtctcgcag
gtgccgctgcgctgcgcgtgggcgatcacgatccacaagtcgcagggcatgacgctcgac
gcggccgtcatggacctcaagcgcaccttcgcgcccggcatgggctacgtcgcattgtcc
cgcgtcgaacggctcgacgggctgttcctcaacggcgtcagcaaccgcatgttcgacgtc
agcgacgacgccgtgcgcctcgacggcacattgcgcgaacgttcggcgcaagcggcgcgc
gcattgcacgaggacggcgcctcgtcgatcgtcgccgcgcaggggcacgcgcagacggcg
gccggggacgacgacgagttcgcgcaggacgagctgttctga
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