Bifidobacterium choerinum: BcFMB_05205
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Entry
BcFMB_05205 CDS
T05748
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bcho
Bifidobacterium choerinum
Pathway
bcho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BcFMB_05205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcho03019
]
BcFMB_05205
03400 DNA repair and recombination proteins [BR:
bcho03400
]
BcFMB_05205
Enzymes [BR:
bcho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BcFMB_05205
Messenger RNA biogenesis [BR:
bcho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BcFMB_05205
DNA repair and recombination proteins [BR:
bcho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BcFMB_05205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
Helicase_Sgs1
ResIII
TrmB
GntR
Motif
Other DBs
NCBI-ProteinID:
ATU20414
UniProt:
A0A2D3D5T4
LinkDB
All DBs
Position
complement(1325565..1327502)
Genome browser
AA seq
645 aa
AA seq
DB search
MTISQEELDAQALATLRRYFGYEDFRPGQGALIHAILEGRDVLGVMPTGSGKSLCYQIPS
LLLHGLTIVISPLISLMKDQVDGANEIGIPAAFINGSQSIDEQEDVFAAVNAGRVRLLYV
APERLETQRFMNFATHADIALVAVDEAHCVSQWGQDFRSSYLGIGDFINALPDRPTVAAF
TATATERVRRDIISMLGLRDPEVVVTGFDRTNLYFDILKLGTRDKANWIARYVADHADES
GIIYCATRKQTEELAETINTLVPQLRAASDAATPSPSPIAVAYHAGLPPAQRERAQRDFV
TDAVPLVVATNAFGMGIDKSNVRYVIHHNMPESIEAYYQEAGRAGRDGEPSRCTLLWNES
DIVTRRRLLDNGGANERLTEDEQEQVRRWKRHLLDAMVGYCRTTECLHRYMTRYFGEDGE
MPAGAHCVGGCVNCDSTFSTTDVSRIARTISMCVHDLGQSYGSGKIVAVLRGSQAKDVLD
RGLDHVPTFGRLADVSQSTVRDVLNQMVSDGFLTITEGRLPIVMFGARAAETIDPAFHYE
MKSITRPKPVRPARQSNPALEPTTFGGGHGGTDEALFERLRGLRLDIAREIGKPPYIVFS
DRSLRDMATRRPHTDDEFLEVSGVGASKLSKYGERFMQAIADFEE
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgacgatttcgcaggaggaactcgacgcgcaggcgctcgcgacattgcgcaggtacttc
ggctatgaggatttccgccccgggcagggcgcgctcatccacgccatcctcgaaggacgc
gacgtgctcggcgtcatgccgaccggctccggcaaatcattgtgctaccagatcccgtcg
ctgctgctgcacggcctgacgatcgtcatctccccgctgatctcgctgatgaaggaccag
gtggacggcgcgaacgaaatcggcatcccggctgccttcatcaacggctcgcagtcgatc
gacgaacaggaggacgtcttcgccgccgtgaacgccggccgcgtccgcctgctgtacgtg
gcgcccgaacgactggaaacacagcggttcatgaacttcgcgacgcacgcggacatcgcg
ctcgtcgccgtcgacgaagcgcactgcgtctcccaatggggtcaggacttccgctcgtcg
tacctcggcatcggcgacttcatcaacgcgctgcccgaccgccccaccgtcgccgcattc
accgcgaccgccactgagcgcgtgcgccgcgacatcatcagcatgctcggcctgcgcgac
ccggaggtcgtcgtcaccggcttcgaccgcacgaacctgtacttcgacatcctcaaactc
ggcacgcgcgacaaggcgaactggattgcgcgctacgtggccgaccacgctgacgaatcc
ggcatcatctactgcgcgacaagaaaacagacagaggaactcgccgagacaatcaacacg
ctcgtcccgcagctgcgcgccgcatccgacgccgcgacgccctcgccctccccaatcgcc
gtcgcctaccatgcgggactgccgccggcgcagcgcgagcgcgcgcaacgcgacttcgtg
accgacgctgtgccgctcgtcgtcgcgacgaacgcgttcggcatgggcatcgataaatcg
aacgtgcgctacgtcatccaccacaacatgccggagagcatcgaggcctactaccaggag
gcgggacgcgccggccgcgacggcgagccgagccgctgcacgctgctgtggaacgagtcg
gacatcgtcacgcggcgccggctgctcgacaacggcggcgccaacgagcgcctcaccgag
gacgagcaggagcaagtgcgccgctggaaacgccatctgctcgacgcgatggtcggctac
tgccgcacgaccgaatgcctgcaccgctatatgacgcgctacttcggcgaggacggcgag
atgccggccggcgcgcactgcgtcggcgggtgcgtgaactgcgacagcacgttctcgacg
accgacgtctcgcgcatcgcgcgcacgatcagcatgtgcgtgcacgatctgggacagtcg
tacggcagcggcaagatcgtcgccgtgctgcgcggctcgcaggcgaaggacgtgctcgat
cgcggcctcgaccatgtgccgaccttcggcaggctcgccgacgtgtcgcagtcgacggtg
cgcgatgtgctcaaccagatggtgtcggacgggttcctgacgatcaccgaggggcggctg
ccgatcgtcatgttcggcgcccgcgcggccgagacgatcgacccggcgttccactacgag
atgaagagcatcacgcgaccgaagccggtgcgtccggcgcggcagtcgaatccggcgctc
gagccgacgaccttcggcggcgggcacggcggcaccgacgaggcattgttcgaacgcctg
cgcgggctgcgtctcgacatcgcgcgcgagatcggcaagccgccgtacatcgtgttctcg
gaccggtcccttcgcgacatggcgacgcgccgtccgcacaccgacgacgagttcctcgag
gtcagcggcgtcggcgcgtcgaagctcagcaagtacggcgagcgcttcatgcaggcgatc
gccgacttcgaggagtga
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