Bifidobacterium choerinum: BcFMB_05665
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Entry
BcFMB_05665 CDS
T05748
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
bcho
Bifidobacterium choerinum
Pathway
bcho03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BcFMB_05665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcho03400
]
BcFMB_05665
Enzymes [BR:
bcho01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
BcFMB_05665
DNA repair and recombination proteins [BR:
bcho03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BcFMB_05665
Prokaryotic type
BcFMB_05665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ATU20488
UniProt:
A0A087AHY1
LinkDB
All DBs
Position
complement(1437486..1438187)
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AA seq
233 aa
AA seq
DB search
MSRPCKPLNESIDPQWALALAPVEAQIHRMGDFLHEQAAEGRQILPDAHNILRAFRVPPL
RDVKVLIVGQDPYPTPGYPVGLSFSVAPDVRPLPKSLINIYKELQDDLHVPPPRNGDLSP
WTRQGVMLLNRSLTVEAHRPNSHQDKGWRPVTDAAVRALNDRVDDDGRPLPLVAILWGRN
AQTLAPLLTNAFIIASAHPSPLSASRGFFGSHPFSRANAALEAMGASPIDWTL
NT seq
702 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaccatgcaaaccgctgaacgaatcgatcgacccgcaatgggcgctcgccctc
gcccccgtcgaggctcagatccaccggatgggcgacttcctgcacgagcaggccgccgaa
ggcaggcagatcctgccggacgcgcacaacatcctgcgcgcgttccgtgtgccgccgttg
cgcgacgtcaaggtgctcatcgtcgggcaggacccgtatccgacgccgggctacccggtc
ggcctgagcttctcggtggcgccggacgtgcgcccgctgcccaagagcctgatcaacata
tataaggaactgcaggacgacctgcatgtgccgccgccgcgcaacggcgacctgagcccg
tggacgcgccagggcgtcatgctgctcaacaggagcctgaccgtcgaggcgcaccgtccg
aacagccatcaggacaagggctggaggccggtcaccgacgcggccgtcagggcgctcaac
gaccgcgtcgacgacgacggcaggccgctgccgctcgtcgcgatcctgtggggacgcaac
gcgcagacgctcgcgccgctgctgacgaacgccttcatcatcgcctcggcgcatccgagc
ccgctgtccgcctcgcgcggcttcttcggctcgcacccgttctcgcgcgcgaacgccgcg
ctcgaggcgatgggcgcctccccgatcgactggacgctctag
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