Bifidobacterium choerinum: BcFMB_07375
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Entry
BcFMB_07375 CDS
T05748
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
bcho
Bifidobacterium choerinum
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcho03019
]
BcFMB_07375
Enzymes [BR:
bcho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BcFMB_07375
Messenger RNA biogenesis [BR:
bcho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BcFMB_07375
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
MTR4-like_stalk
ABC_tran_CTD
Sigma54_activat
nSTAND3
DUF7146
Motif
Other DBs
NCBI-ProteinID:
ATU20766
UniProt:
A0A2D3D7D2
LinkDB
All DBs
Position
1845506..1848109
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AA seq
867 aa
AA seq
DB search
MARHHRHAAHRHDEDAEPRELSPSERYARFTEVRRRRRSVAQRFADSLPFELDGFQMDAN
EALEAGSNVLVAAPTGAGKTVVADFAVYLAQEQNAKAFYTTPIKALSNQKYHDLVALYGP
DKVGLLTGDTSINSEADIVVMTTEVLRNMLYEHSTTLEALRYVVLDEVHYLADRFRGPVW
EEVIIHLPSSVHIVGLSATVSNVEDFADWIASVRGETKLVISEHRPVPLDQYVLVQRDPR
TEPELLDLYRRDEHGEATTKPNARLTAKLDEFDRREMRRKGADSHDRHRGTGRHGRPDGR
GGRRRVERYHPRRWAVIDELNFLRMLPAIYFIFSRNGCDEAVEQCLDAGLRLTTDEEARR
IDVIVDEMIEGQLTHDDLKTLRFAQFRHALEEGFAAHHAGMIALFKQIVERLFEEGLIKV
VFATETLALGINMPARSVIIEKLEKYDGTGIVGLTPGEYTQLTGRAGRRGIDTIGNAIVV
DHRGFKPETAVALSSKRVYPLHSSFKPTFNMAVNLLNSSDYETARDTLDHSFAQWEANAS
AWQIEARIESLEKAIAGYEDAMACEYGDFTELLRIRMQLSDLQKNERRRLKHEVFRDNAE
KSRAFRRLDVRIAALKEREHDHPCKACPDFAQHMKWGNRWIRETRELARLRDRYDSRTGS
VARQFDRICTILERLGYLERADEDGVRDYTLTEHGQLLRRLYSERDLVLAQAITAGTLDG
LDAAQLAALISSILYEARRGEGGEPRRYPGGPHGLVAQRAHELAELDDQMLMLCEDLGVT
NYLQPLDFGIVDIVYDWARGDSLSEVLEHTELTAGDFVRNAKRLADVLQQIAAAEPYMGV
EHVELAARAHEAYEAVNRGIVAYSGVD
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atggcacgacatcacaggcacgccgcacatcgtcacgacgaggacgccgaacccagagag
ctgagcccttcggagcgctacgcgcgcttcaccgaggtgcgtcgcaggcgccgctcggtg
gcgcagcgcttcgccgactcgctgcccttcgagctcgacgggttccagatggacgcgaac
gaggcgctcgaggcaggctcgaacgtgctcgtcgcggcgccaaccggcgcgggcaagacc
gtcgtcgccgacttcgccgtctacctcgcccaggaacagaacgcgaaagccttctacaca
acgccgatcaaggcgctgagcaaccagaagtaccatgacctcgtcgcgctctacgggccg
gacaaggtcggcctgctcaccggtgacacgtcgatcaactcggaggcggacatcgtcgtc
atgacgaccgaggtgctgcgcaacatgctctacgagcattcgacgacgctcgaggcgctg
cgctacgtcgtgctcgacgaggtgcactacctcgccgaccgtttccgcggcccggtctgg
gaggaggtcatcatccatctgccgtcctcggtgcacatcgtcggcctgtcggcgacggtc
tcgaacgtcgaggacttcgccgactggatcgcctcggtgcgcggcgagacgaagctcgtc
atctccgagcaccgcccggtgccgcttgaccagtatgtcctcgtgcagcgcgacccgcgc
accgaaccggagctgctcgacctgtaccggcgcgacgagcacggcgaggcgacgacgaag
ccgaacgcgcggctgacggcgaagctcgacgaattcgaccgccgcgagatgcggcgcaag
ggcgccgactcccatgaccggcaccgtggtacaggacgccacggacgcccggacggcagg
ggaggacgcaggcgcgtcgaacgctaccatccgcgccgctgggccgtcatcgacgagctc
aacttcctgcgcatgctgccggcgatctacttcatcttctcgcgcaacggctgcgacgag
gccgtcgagcagtgcctcgacgcggggctgcggctgacgaccgacgaggaggcgcgccgc
atcgacgtcatcgtcgacgagatgatcgaggggcagctcacgcacgacgacctgaagacg
ctgcgcttcgcgcagttccgccatgcgctcgaggagggcttcgccgcgcaccacgcgggc
atgatcgcgctgttcaagcagatcgtcgaacggctcttcgaggagggcctgatcaaggtc
gtcttcgcgaccgagacgctcgcgctgggcatcaacatgccggcgcgcagcgtcatcatc
gagaagctcgagaagtacgacggcaccggcatcgtcggcctgacgccgggggagtacacg
cagctcaccggccgcgccggccgccgcggcatcgacacgatcggcaacgcgatcgtcgtc
gaccaccgcgggttcaagcccgagacggcggtggcgctgtcgagcaagcgcgtctacccg
ctgcattcgagcttcaagcccacgttcaacatggccgtcaacctgctcaacagcagcgac
tacgagacggcgcgcgacacgctcgaccattccttcgcgcaatgggaggcgaacgcctcc
gcctggcagatcgaggcgcgcatcgagtcgctcgagaaggcgatcgccggctacgaggac
gcgatggcctgcgagtacggcgacttcaccgagctgctgcgcatccgcatgcagctgagc
gacctgcagaagaacgaacgccgccgcctcaagcacgaggtcttccgggacaacgcggag
aagtcgcgcgccttccgccgcctggacgtgaggatcgccgcgctcaaggagcgcgagcac
gaccatccgtgcaaggcgtgcccggatttcgcgcagcacatgaagtggggcaaccgctgg
atccgcgagacccgcgagctcgcgcgtctgcgcgaccgctacgattcacgcaccggttcg
gtggcgcgccagttcgaccgcatctgcacgatcctcgaacgtctcggctatctggagcgc
gccgacgaggacggcgtgcgcgactatacactgaccgagcatggccagctgctgcgccgc
ctgtattcggaacgcgacctcgtgctcgcccaggcgatcacggcgggcacgctcgacggc
ctcgacgccgcgcagctcgccgcgctcatctcgtcgatcctgtatgaggcgcgccgcggc
gaagggggagagccgcgacggtatcctggcggcccccacggcctcgtcgcgcagcgtgcg
cacgagctcgccgagctcgacgaccagatgctcatgctgtgcgaggacctcggcgtcacg
aactacctgcagccgctcgacttcggcatcgtcgacatcgtctacgactgggcgcgcggc
gacagcctctccgaggtgctcgagcacaccgagctgaccgccggcgacttcgtgcgcaac
gcgaagcggctcgccgacgtgctccagcagatcgccgccgccgagccgtacatgggcgtc
gagcacgtcgagctcgcggcgcgcgcgcatgaggcctacgaggccgtcaaccgcggcatc
gtcgcctactcgggcgtcgactga
DBGET
integrated database retrieval system
