Bifidobacterium choerinum: BcFMB_08375
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Entry
BcFMB_08375 CDS
T05748
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bcho
Bifidobacterium choerinum
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bcho03016
]
BcFMB_08375
Enzymes [BR:
bcho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BcFMB_08375
Transfer RNA biogenesis [BR:
bcho03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BcFMB_08375
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ATU20926
UniProt:
A0A087ADL9
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All DBs
Position
complement(2050726..2052012)
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AA seq
428 aa
AA seq
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MDAEPVLLTQPRGGVPEVTDTLAGYERACERLAAASGPLAADAERASGYRYGHEDRLIQF
KREGAGIILLDPIALGEQGADWDLFNEAVGDAVWILHDSRQDLPGFADLGLRPERLFDTE
IAARMLGLHRYGLAHVTEHYLGIALAKEHSAADWSYRPLSRDLRDYAALDVELLIELDEA
MTRDLKRQGKLEWAQEEFSHALMTGLAPRRPHPTPWMRVSHITDLGGDARALAVAKALWQ
RRDELARHHDIAPTLLLSDAAIIEAAKRKPHNAAQFRAIRSLNERVRIQLGTEQGKMFER
YAPIQRQIKPRVWKETIQQALDLPDAQLPQVVRQHGGGEGGNAPKSMRVWRQHHPERYRR
LQACRAAVNQIAEDVRIPPDMLLKPQILRNLCWTDDPKRRDVAAFLRDEGAREWQIGLLN
ASLTRVIM
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
gtggacgctgagccggtcctgctgacacaaccacgtggaggcgtgccggaggtcaccgac
acgctcgccggctacgaacgcgcctgcgagcgcctcgccgcggcctcggggccgctcgcc
gccgacgccgaacgcgcctccggctaccgctacggccatgaggaccgcctcatccagttc
aagcgcgagggcgccggcatcatcctgctcgacccgatcgcgctcggcgaacagggggcg
gactgggacctgttcaacgaggccgtcggcgacgccgtctggatcctgcacgactcgagg
caggacctgcccgggttcgcggacctggggctgcgccccgagcgcctgttcgacaccgag
atcgccgcgcgcatgctcggcctgcaccgctacgggctcgcccacgtcaccgagcactac
ctcggcatcgcgctcgccaaggagcattcggccgccgactggtcgtacaggccgctgtcg
cgtgacctgcgcgactacgcggcgctcgacgtcgagctgctcatcgagctcgacgaggcg
atgacgcgcgacctcaaacgtcagggcaagctcgagtgggcgcaggaggagttctcccat
gcgctgatgaccggcctcgcgccgcgccggccgcatccgacgccgtggatgcgcgtctcg
catatcaccgacctcggcggcgacgcccgcgcgctcgccgttgcgaaggcgctgtggcag
cggcgtgacgagctcgcgaggcaccatgacatcgcgccgacgctgctgctgtccgacgcg
gcgatcatcgaagcggccaagcgcaagccgcacaacgccgcgcagttccgcgcgatccgt
tcgctcaacgaacgcgtgcgcatccagctgggcaccgagcagggcaagatgttcgaacgc
tatgcgccgatccagcgccagatcaagccgcgcgtgtggaaggagacgatccagcaggcg
ctcgacctgcccgacgcgcagctgccgcaggtcgtgcgccagcacggcggcggcgagggc
ggcaacgcgccgaagtcgatgcgcgtgtggcgccagcaccatccggagcgctacaggcgg
ctgcaggcatgccgcgccgccgtcaaccagatcgccgaggacgtgcgcatccccccggac
atgctgctcaagccgcagatcctgcgcaacctgtgctggaccgacgatccgaagcggcgc
gatgtggccgctttcctgcgcgacgagggcgcccgcgaatggcagatcgggctgttgaac
gcgtcgctgactcgcgttatcatgtaa
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