Bifidobacterium choerinum: BcFMB_08480
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Entry
BcFMB_08480 CDS
T05748
Name
(GenBank) DNA topoisomerase IV
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
bcho
Bifidobacterium choerinum
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcho03032
]
BcFMB_08480
03400 DNA repair and recombination proteins [BR:
bcho03400
]
BcFMB_08480
Enzymes [BR:
bcho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
BcFMB_08480
DNA replication proteins [BR:
bcho03032
]
Prokaryotic type
DNA Topoisomerases
BcFMB_08480
DNA repair and recombination proteins [BR:
bcho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BcFMB_08480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
crAss001_48
DUF4890
RPAP1_N
Motif
Other DBs
NCBI-ProteinID:
ATU20946
UniProt:
A0A2D3D7W0
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All DBs
Position
2074534..2077203
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AA seq
889 aa
AA seq
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MVSRRKPPAAAYDPRTVKEHIVETPLGEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR
IVYQMGEMNLLPTRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG
NFGSLDDGPAASRYTEARLAPAALGMNAGLDEDTVDFTPNYDNKLKEPEVLPAAIPNLLV
NGASGIAVGMATNMATHNLGEVVAAAKHVMRHPEATLDELMDYLPGPDWPGGGIVIGRDG
IREAYESGRGSLTTRSTTHVENVTARKKAIVVTELPYMVGPERVLERISEGVKSHKLEGI
SNAIDLTDRHNGTRIVIELKTGFDPDAVLSQLFKHTPLQENFTINNVALVDGRPHTMGLR
EMLDVWIGHRRGVIRRRSEYRRRKALERLHLVEGLLLALVDIDEVIQVIRSSEDADAAKT
KLIAVFDLDDVQAQYILDLRLRRLTKMSRIELEAERDELRGRIDELDAILASDAALDGVV
EKEMDETVAAYGTPRRTVLLDMDADGRLTPVEARGADSTLNAFALDAARHVEQVSEAAAD
VAAARKGAATGDAASALQIEDEPCVVALSATGRIARLDPEASEVWAARTPETTAGGDGCV
MSMIATSTRADYGIVTSAGRFVLAHAVELPHVAADTPLDLSTGIDARELVSSTQSTEPID
GERVVAVVALPKDKDEEAAPLALGTRGGVVKRWNRESPTTMDSWSVIDLKDGDELLAARE
APDGSRLVFVSTDSSLLTFDAKQVRAQGRTAAGMAGIRLADGCEVLAFAVVHEDELAWTP
EEEHEDGTTSPAHGAVVLTVAGDGASLLGTDTGSAKVSPLALYPTKGRGTGGVRSQRFLK
GQNTLIRAYVGAWPLVACTESGHAVALPAPDMRRDGSGSELAAAIGYVA
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggtttcgcgtcgcaagccgccagcagcggcctatgatccgcgcacggtcaaggaacac
atcgtcgagacgccgctcggcgaggagatgagcaaatccttcctcgaatacgcctattcg
gtcatctacgcccgcgcgctgcccgacgcgcgcgacggactcaagccggtgcaacggcgc
atcgtctaccagatgggcgagatgaacctgctgccgacgcgcccgtacatgaagtcggcg
cgcgtcgtcggcgaggtcatgggcaagctgcacccgcacggcgactcggcgatctacgag
gcgatggtgcgccttgcgcagcccttcgcgatgcggctgccgctcgtcgacggccacggc
aacttcggctcgctcgacgacggcccggcggcctcccgatacaccgaggcgcgtctggcg
ccggccgcgctcggcatgaacgccggcctcgacgaggacaccgtcgacttcacgccgaac
tacgacaacaagctcaaggaacccgaggtgctgcccgcggcgatcccgaacctgctcgtc
aacggcgcctccggcatcgccgtcggcatggcgacgaacatggccacgcacaacctcggc
gaggtcgtcgccgccgccaagcacgtcatgcgccaccccgaggccacgctcgacgagctg
atggactacctgcccgggccggactggccgggcggcggcatcgtcatcggacgcgacggc
atccgcgaggcgtacgagagcggacgcggctcgctgacgacgcgttcgacgacgcacgtc
gagaacgtcacggcacgcaagaaggcgatcgtcgtcaccgagctgccgtacatggtcggc
cccgaacgcgtgctcgaacgcatctcggaaggcgtcaagagccacaagctcgaaggcatc
tcgaacgcgatcgacctgacggaccggcacaacggcacgcgcatcgtcatcgagctcaag
accggcttcgacccggacgccgtgctttcccagctgttcaagcacacgccgctgcaggag
aacttcacgatcaacaacgtcgcgctcgtcgacggccgcccgcacacgatggggctgcgc
gagatgctcgacgtgtggatcgggcaccggcgcggcgtcatccgccgtcgcagcgaatac
cgccgccgcaaggcgctcgagcggctgcacctcgtcgaaggcctgctgctcgcactcgtc
gacatcgacgaggtcatccaggtcatccgctcatccgaggacgcggacgcagcgaagacg
aagctcatcgccgtcttcgacctcgacgacgtgcaggcgcagtacatcctcgacctacgg
ctgcgcaggctcacgaagatgagccgcatcgagctcgaggcggaacgcgacgagctgcgc
ggacgcatcgacgagctcgatgcgatcctcgcgtccgacgcggcgctcgacggggtcgtc
gaaaaggagatggacgagaccgtcgccgcctacggcacgccgcggcgcaccgtgctgctc
gacatggacgccgacggcagactcacgccggtcgaggcgcgcggcgccgacagcacgctc
aacgcgttcgcgctcgacgcggcgcgccacgtcgaacaggtctccgaggccgcggcggac
gtggcggccgcgcgcaagggcgccgcgaccggcgacgcggcgagcgcgctgcagatcgag
gacgagccgtgcgtcgtcgcgctgagcgcgaccggacggatcgcgcgcctcgacccggag
gcatccgaggtgtgggcggcgcgcacgccggagacgacggcgggcggcgacggctgcgtc
atgtcgatgatcgcgacgagcacgcgcgccgactacggcatcgtcacgtcggcgggacgt
ttcgtgctcgcgcacgccgtcgagctgccccatgtcgccgcggacacgccgctcgacctg
tccacgggcatcgatgcgcgcgaactcgtgtcgtcgacgcagagcaccgagccgatcgac
ggcgaacgcgtcgtcgccgtcgtcgcactgccgaaggacaaggacgaggaagccgcgccg
ctcgcgctcggcacacgcggcggcgtcgtcaaacgctggaacagggaatcgccgacgacg
atggattcatggagcgtcatcgacctcaaggacggcgacgagctgctcgccgcgcgtgag
gcgcccgacggcagccgtctcgtgttcgtctcgaccgactcgtcgctgcttaccttcgac
gcgaagcaggtgcgcgcgcaggggcgcacggctgccggcatggcgggcatccgcctcgcc
gacggctgcgaggtgctcgccttcgccgtcgtgcatgaggacgagctggcgtggacgccc
gaagaggaacatgaggacggcacgacgtcgcccgcgcacggcgccgtcgtgctcaccgtg
gccggcgacggcgcgtcgctgctcggcaccgacaccggatcggcgaaggtctcgccgctc
gcgctgtatccgacgaaggggcgcggcaccggcggcgtgcgctcgcagcgtttcctcaag
gggcagaacacattgatccgcgcatatgtgggcgcctggccgctcgtcgcgtgcaccgaa
tcagggcatgcggtggcgctgccggccccggacatgcgccgcgacggctccggcagcgaa
ctggccgccgcgatcggctacgtcgcatga
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