Bifidobacterium choerinum: BcFMB_08505
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Entry
BcFMB_08505 CDS
T05748
Name
(GenBank) DNA topoisomerase IV subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
bcho
Bifidobacterium choerinum
Brite
KEGG Orthology (KO) [BR:
bcho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcho03032
]
BcFMB_08505
03400 DNA repair and recombination proteins [BR:
bcho03400
]
BcFMB_08505
Enzymes [BR:
bcho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
BcFMB_08505
DNA replication proteins [BR:
bcho03032
]
Prokaryotic type
DNA Topoisomerases
BcFMB_08505
DNA repair and recombination proteins [BR:
bcho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BcFMB_08505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
Motif
Other DBs
NCBI-ProteinID:
ATU20951
UniProt:
A0A087ADP5
LinkDB
All DBs
Position
complement(2085870..2088200)
Genome browser
AA seq
776 aa
AA seq
DB search
MAKKDYGADSLTVLEGLDAVRKRPGMYIGTTDTQGLMHCLWEIIDNAVDEALAGACTHIV
VTLHKDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGS
SVVNALSSRLDVEVDRNGNTYHMAFHQGHPGVYTDADPEHPSPDSPFRKTRKNRPTELEI
IGHVKPKTTGTRIRYWADPEIFNDTARFDYDQLIDRVRQTSFLVPGLKLDVVDERIEATG
DEHVDELIENDIGAAQAAAAETADDEDAAIVRASAGDDAIARTEAENMQQQAEAGAATTL
EATVSPQPDAPTPGHRRLEEFCHTGGVVDFVDFLSQGEPVSNIWRITGQGTYHEETQAVD
EHGDLHAQDITRACDVDIALRWVNGYDTTIRSFVNVVATPGGGMHVDGFLNAVTRQVRKA
VEDNARKLKVNLKDAKMKVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPVVTR
IVDRQFAEMITGSKRGYKEQSSRVLEKIVGEMHARIQARKTKEVARRKTALESASMPPKL
SDCQPGNDDVAELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKEC
AAIIQVVGAGSGASFDLSQARYNKVIMMTDADVDGAHIRTLLLTLFYRYMRPLIEAGHVY
AAVPPLHRIALTGPRKGEYIYTYSDDELAGKLEQLDRDHISYADDIQRYKGLGEMDANQL
ADTTMDPRTRLLRRIRMEDAERAAGIFSLLMGDEVPPRRQFIVDNADDFDRSKIDT
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaagactacggcgccgactcgctgacggtcctcgagggcctcgacgcggtg
cgcaagcgccccggcatgtacatcggcacgaccgacacccagggcctgatgcactgcctg
tgggagatcatcgacaacgccgtcgacgaggcgctcgccggcgcgtgcacgcacatcgtc
gtcacgctgcacaaggacggatcggtcgaggtcgccgacaacggacgcggcatcccggtc
gacgtcgagccgaagacgaagctcaccggcgtcgaggtcgtgctcacgaagctgcacgcc
ggcgcgaagttcggcaacgcctcgtacaacgcggccggcggcctgcacggcgtcggctcg
tcggtcgtcaacgcgttgagctcgaggctcgacgtcgaggtcgaccgcaacggcaacacg
taccacatggcctttcaccaagggcatccgggcgtctacacggacgccgacccggagcat
ccgtcgccggattcgccgttcaggaagacgcgcaagaaccggccgaccgaactcgagatc
atcggccacgtcaagccgaagacgaccggcacgcgcatccgctactgggccgacccggag
atcttcaacgacacggcgcgattcgactacgaccagctcatcgaccgcgtgcgccagacg
agcttcctcgtgccgggactcaagcttgacgtcgtcgacgagcgcatcgaggccaccggc
gacgagcacgtcgacgagctcatcgagaacgacatcggcgccgcgcaggccgcggccgcg
gagaccgccgacgacgaggacgccgcgatcgtgcgcgcctcggcgggcgacgacgcgatc
gcgcgcaccgaggccgagaacatgcagcagcaggccgaggccggtgccgcgacgacgctc
gaagccacggtctcgccgcagccggacgcgccgacgcccggacaccgcagacttgaggag
ttctgccacaccggcggcgtcgtcgacttcgtcgacttcctgtcacaaggcgagccggtg
tcgaacatctggaggatcaccggacagggcacctaccacgaggagacgcaggccgtcgac
gagcacggcgacctgcatgcgcaggacatcacgcgcgcatgcgacgtcgacatcgcgctg
cgctgggtcaacgggtacgacacgacgatccgcagcttcgtcaacgtcgtggcgacgccc
ggcggcggcatgcacgtcgacggcttcctcaacgccgtcaccaggcaggtgcgcaaggcc
gtcgaggacaacgcgcgcaagctcaaggtgaacctcaaggacgcgaagatgaaggtcgaa
cgcgacgacatcctcgccggactcgtcgccgtcgtcaccgtgcgcatcgccgagccacag
ttccaggggcagacgaaggacgtgctcggcaccgcgcaggtcaagccggtcgtcacgcgc
atcgtcgacaggcagttcgccgagatgatcaccggatccaaacgcggctacaaggagcag
tcgtcgcgtgtgctcgagaagatcgtcggcgagatgcacgcgcgcatccaggcgcgcaag
acgaaggaggtcgcacgccgcaagaccgcgctcgaatcggcgagcatgccgccgaagctc
tccgactgccagccgggcaacgacgacgtcgccgaactgttcatcgtcgagggcgactcg
gcgctcggcacggcgaaggcggcgcgcaactcggcgttccaggcgctgctgccgatccga
ggcaagatcctcaacgtgcagaaggcgtcgctcgcgcagatgctgtcgaacaaggaatgc
gcggcgatcatccaggtcgtcggcgccggatcgggcgcctccttcgacctgtcgcaggcg
cgctacaacaaggtcatcatgatgaccgacgccgacgtcgacggcgcgcacatccgcacg
ctgctgctgacgctgttctaccgctacatgcgcccgctcatcgaggccgggcacgtgtac
gcggccgtgccgccgctgcaccggatcgcgctgaccgggccgcgcaagggcgaatacatc
tacacgtactccgacgacgagctcgccggcaaactcgagcagctcgaccgcgaccacatc
agctacgccgacgacatccagcgctacaagggcctgggcgagatggacgcgaaccagctc
gccgacacgacgatggacccgcgcacgcgcctgctacgccgcatccgaatggaggacgcc
gaacgcgccgccggcatcttcagcctgctcatgggcgacgaggtgccgccacgcaggcag
ttcatcgtcgacaacgcggacgacttcgatcgttcgaagatcgacacctga
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