KEGG   Bifidobacterium choerinum: BcFMB_08505
Entry
BcFMB_08505       CDS       T05748                                 
Name
(GenBank) DNA topoisomerase IV subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
bcho  Bifidobacterium choerinum
Brite
KEGG Orthology (KO) [BR:bcho00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bcho03032]
    BcFMB_08505
   03400 DNA repair and recombination proteins [BR:bcho03400]
    BcFMB_08505
Enzymes [BR:bcho01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     BcFMB_08505
DNA replication proteins [BR:bcho03032]
 Prokaryotic type
  DNA Topoisomerases
   BcFMB_08505
DNA repair and recombination proteins [BR:bcho03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BcFMB_08505
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c
Other DBs
NCBI-ProteinID: ATU20951
UniProt: A0A087ADP5
LinkDB
Position
complement(2085870..2088200)
AA seq 776 aa
MAKKDYGADSLTVLEGLDAVRKRPGMYIGTTDTQGLMHCLWEIIDNAVDEALAGACTHIV
VTLHKDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGS
SVVNALSSRLDVEVDRNGNTYHMAFHQGHPGVYTDADPEHPSPDSPFRKTRKNRPTELEI
IGHVKPKTTGTRIRYWADPEIFNDTARFDYDQLIDRVRQTSFLVPGLKLDVVDERIEATG
DEHVDELIENDIGAAQAAAAETADDEDAAIVRASAGDDAIARTEAENMQQQAEAGAATTL
EATVSPQPDAPTPGHRRLEEFCHTGGVVDFVDFLSQGEPVSNIWRITGQGTYHEETQAVD
EHGDLHAQDITRACDVDIALRWVNGYDTTIRSFVNVVATPGGGMHVDGFLNAVTRQVRKA
VEDNARKLKVNLKDAKMKVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPVVTR
IVDRQFAEMITGSKRGYKEQSSRVLEKIVGEMHARIQARKTKEVARRKTALESASMPPKL
SDCQPGNDDVAELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKEC
AAIIQVVGAGSGASFDLSQARYNKVIMMTDADVDGAHIRTLLLTLFYRYMRPLIEAGHVY
AAVPPLHRIALTGPRKGEYIYTYSDDELAGKLEQLDRDHISYADDIQRYKGLGEMDANQL
ADTTMDPRTRLLRRIRMEDAERAAGIFSLLMGDEVPPRRQFIVDNADDFDRSKIDT
NT seq 2331 nt   +upstreamnt  +downstreamnt
atggcgaagaaagactacggcgccgactcgctgacggtcctcgagggcctcgacgcggtg
cgcaagcgccccggcatgtacatcggcacgaccgacacccagggcctgatgcactgcctg
tgggagatcatcgacaacgccgtcgacgaggcgctcgccggcgcgtgcacgcacatcgtc
gtcacgctgcacaaggacggatcggtcgaggtcgccgacaacggacgcggcatcccggtc
gacgtcgagccgaagacgaagctcaccggcgtcgaggtcgtgctcacgaagctgcacgcc
ggcgcgaagttcggcaacgcctcgtacaacgcggccggcggcctgcacggcgtcggctcg
tcggtcgtcaacgcgttgagctcgaggctcgacgtcgaggtcgaccgcaacggcaacacg
taccacatggcctttcaccaagggcatccgggcgtctacacggacgccgacccggagcat
ccgtcgccggattcgccgttcaggaagacgcgcaagaaccggccgaccgaactcgagatc
atcggccacgtcaagccgaagacgaccggcacgcgcatccgctactgggccgacccggag
atcttcaacgacacggcgcgattcgactacgaccagctcatcgaccgcgtgcgccagacg
agcttcctcgtgccgggactcaagcttgacgtcgtcgacgagcgcatcgaggccaccggc
gacgagcacgtcgacgagctcatcgagaacgacatcggcgccgcgcaggccgcggccgcg
gagaccgccgacgacgaggacgccgcgatcgtgcgcgcctcggcgggcgacgacgcgatc
gcgcgcaccgaggccgagaacatgcagcagcaggccgaggccggtgccgcgacgacgctc
gaagccacggtctcgccgcagccggacgcgccgacgcccggacaccgcagacttgaggag
ttctgccacaccggcggcgtcgtcgacttcgtcgacttcctgtcacaaggcgagccggtg
tcgaacatctggaggatcaccggacagggcacctaccacgaggagacgcaggccgtcgac
gagcacggcgacctgcatgcgcaggacatcacgcgcgcatgcgacgtcgacatcgcgctg
cgctgggtcaacgggtacgacacgacgatccgcagcttcgtcaacgtcgtggcgacgccc
ggcggcggcatgcacgtcgacggcttcctcaacgccgtcaccaggcaggtgcgcaaggcc
gtcgaggacaacgcgcgcaagctcaaggtgaacctcaaggacgcgaagatgaaggtcgaa
cgcgacgacatcctcgccggactcgtcgccgtcgtcaccgtgcgcatcgccgagccacag
ttccaggggcagacgaaggacgtgctcggcaccgcgcaggtcaagccggtcgtcacgcgc
atcgtcgacaggcagttcgccgagatgatcaccggatccaaacgcggctacaaggagcag
tcgtcgcgtgtgctcgagaagatcgtcggcgagatgcacgcgcgcatccaggcgcgcaag
acgaaggaggtcgcacgccgcaagaccgcgctcgaatcggcgagcatgccgccgaagctc
tccgactgccagccgggcaacgacgacgtcgccgaactgttcatcgtcgagggcgactcg
gcgctcggcacggcgaaggcggcgcgcaactcggcgttccaggcgctgctgccgatccga
ggcaagatcctcaacgtgcagaaggcgtcgctcgcgcagatgctgtcgaacaaggaatgc
gcggcgatcatccaggtcgtcggcgccggatcgggcgcctccttcgacctgtcgcaggcg
cgctacaacaaggtcatcatgatgaccgacgccgacgtcgacggcgcgcacatccgcacg
ctgctgctgacgctgttctaccgctacatgcgcccgctcatcgaggccgggcacgtgtac
gcggccgtgccgccgctgcaccggatcgcgctgaccgggccgcgcaagggcgaatacatc
tacacgtactccgacgacgagctcgccggcaaactcgagcagctcgaccgcgaccacatc
agctacgccgacgacatccagcgctacaagggcctgggcgagatggacgcgaaccagctc
gccgacacgacgatggacccgcgcacgcgcctgctacgccgcatccgaatggaggacgcc
gaacgcgccgccggcatcttcagcctgctcatgggcgacgaggtgccgccacgcaggcag
ttcatcgtcgacaacgcggacgacttcgatcgttcgaagatcgacacctga

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