Candidatus Blochmanniella chromaiodes: BCHRO640_114
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Entry
BCHRO640_114 CDS
T02430
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bchr
Candidatus Blochmanniella chromaiodes
Pathway
bchr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bchr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCHRO640_114 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bchr03019
]
BCHRO640_114 (deaD)
03009 Ribosome biogenesis [BR:
bchr03009
]
BCHRO640_114 (deaD)
Enzymes [BR:
bchr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BCHRO640_114 (deaD)
Messenger RNA biogenesis [BR:
bchr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BCHRO640_114 (deaD)
Ribosome biogenesis [BR:
bchr03009
]
Prokaryotic type
rRNA helicases
BCHRO640_114 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGC03395
UniProt:
A0ABM5NCT0
LinkDB
All DBs
Position
132905..134617
Genome browser
AA seq
570 aa
AA seq
DB search
MSKTVDSFIDLGLNRYIVNVLHDVGYTKPLPIQIQCIPYLLAGYDVLGMAHTGSGKTAAF
VLPLLHNVDINNSCSQGLIITPTRELAIQIGRVCSNFAKYMKKINVVTLYGGQSYGIQLS
ALNKRPHIIVSTPGRLIDHLNRGTANLSQLKTLVIDEADEMLRMGFLEDVERIIKNIPVK
RQTALFSATLPMGIRRISYRFMNNPKEVFIHSNTSMCANIRQSYWLVHSGIAKHEALMRF
LETEDFDAAIVFVRTKYATLEISEILERFGYNSAALNGDMNQTVRHQTLDRLRHGKLDIL
IATDVAARGLDVHRISLVINYDIPINSDAYIHRIGRTGRAGCMGKSLLFVEHKEYRLLRH
IERKIKLKIPEVQYPTSKTLFDCRLSRFTNKVEYQLSTENDDLDVYRSLLPQIKPRRDLT
TENLAAVLLKIAQGNRPLVFPPDPIIKNKSVSKIRINSSNRQNCFRVENRVIKTKLQSKI
SDNMDAYHISVGRNDGVKIRHIIRVLSNNIANIRYHKIGNIKLFSFHAIIELDKGLSSNK
ILTQLSHARILNKPINMKFLGNMSSCNDVH
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaactgtagactcttttatagatttaggattaaatcgttatattgtcaatgtt
ttacatgatgttgggtatacaaaacctttacctattcaaattcaatgcattccatattta
ttagctggatatgatgtgttaggaatggcgcatacaggtagcggaaaaactgcggcattt
gtcttaccattattacataatgttgatattaacaattcttgttctcaaggtttaattata
acgcctactcgagagttggcgatacaaattgggagagtgtgttctaattttgcaaaatat
atgaaaaaaataaatgttgttactttatatggagggcaaagttatggcattcaattaagc
gctttaaataagagacctcatattatagtaagtactccaggtagactaatagatcattta
aaccgtggaactgctaatttatctcaattaaaaaccttagtaatagatgaagctgatgaa
atgttgcgtatgggatttcttgaagatgtagagcgtatcattaaaaatattccagttaaa
cgtcaaacagcgttattttctgctactttacctatgggtattcgtcgtataagttatcga
tttatgaataatccaaaagaagtatttattcattctaatactagcatgtgtgctaatatt
agacaaagttattggttagtacattcaggaatcgctaaacatgaggctttaatgcgtttt
ttagaaacagaagattttgatgcagctattgtttttgttcgtactaaatatgcaacgttg
gagatttccgaaatattagagagatttggttataatagtgcagctttgaatggagatatg
aatcaaacagtacgacatcagacattagatcgattaaggcatggtaagttagatattctt
atagctactgatgttgctgcacgcggattagatgttcatcgtattagtttagtaataaat
tatgatataccaataaattctgatgcctatatacatcgtataggtagaactggtagagca
ggatgtatgggaaaatccttattatttgtagagcataaagaatatcgtttgttgcgtcat
attgaacgtaaaataaaactaaaaattccagaggttcagtatcctacctctaaaacttta
tttgattgtcgattatcgagatttacgaataaagtagaatatcaattaagtaccgagaat
gatgatttggatgtatatcgatctctattacctcaaataaaacctagaagagacttgaca
acggaaaatttagcagctgttttgctgaaaatagcgcaaggcaatcgtccattggtattt
cctccagatccgattattaaaaataaatcagtttctaaaatacgcataaatagtagtaat
cgtcaaaattgttttcgtgtcgaaaatagagttattaaaactaagttgcaatctaaaatt
tctgataatatggatgcttatcacatatcagtagggcgtaatgatggagttaaaatacgt
catattattagagtgctttcgaataatattgctaatattcgctatcacaaaataggtaat
attaaattattttcctttcatgctattattgagttagacaaagggttatctagcaacaaa
atattaacgcagttgtctcatgcacgtattttaaataaaccaataaatatgaaattttta
ggtaatatgtcctcatgtaatgatgtacattga
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