Candidatus Blochmanniella chromaiodes: BCHRO640_433
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Entry
BCHRO640_433 CDS
T02430
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bchr
Candidatus Blochmanniella chromaiodes
Pathway
bchr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bchr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCHRO640_433 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bchr03019
]
BCHRO640_433 (rne)
03009 Ribosome biogenesis [BR:
bchr03009
]
BCHRO640_433 (rne)
Enzymes [BR:
bchr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BCHRO640_433 (rne)
Messenger RNA biogenesis [BR:
bchr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BCHRO640_433 (rne)
Ribosome biogenesis [BR:
bchr03009
]
Prokaryotic type
rRNA processing factors
BCHRO640_433 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Otoancorin_N
Motif
Other DBs
NCBI-ProteinID:
AGC03689
UniProt:
A0ABN4AY94
LinkDB
All DBs
Position
498103..500700
Genome browser
AA seq
865 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDY
GVERHGFLPIKEISHEYFLSSPASYNKLNIKEILCEGQELIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPKSSGISRRIEGNDRIGLKEILSTLELPEGMSLIIRTAGLGKSIEAL
EWDLTSRLQHWKTIKNTAAKHLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMHLA
KEHITSLGRPDFTKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARSTKGADIEDTAFHTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREIE
NSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESSHHICPRCSGTGSIRDNESLS
LSILRLIEEEALKDNTYEVHAIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYAQMK
TPNYEIRRIRKGETYNKPSYLLATNQDYEITQSSGEMISSNYTYTTEKLQSTARALSNLI
PDYNKIFYYANHKLQFKSKREISWFDNIKNRCHKILSLCIISYNNLKQTLSKIITKNIHW
IYIKIIYQHKPSQSVNHCFKSYPNFYSKYNSNNNKKNYTHNTKNKTNLNNHKKITDFFNK
NNNNNTKSLSKFNDNIYKSIPTPYYTNPTQSIEKITKKPPIQKYKKRYMHNVKHQHLNKA
HHSEYWIWRKLYQSEHTLHMKVNKEPVVSININSYKTYNAADSRIFDKKPTIAEVNSNTI
DNSTNIHTSDLTSNTLYIPKSTNTIIHYPHANHSIAEQHNNISQQDNNNHTQLIRRIRRS
SRHFRINFKYRLQQRREKITSKKMQ
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgctactcaacaagaagaattacgggtagcattagtagat
ggacaacgattatatgatctagatattgaaacagtaggtcatgaacaaaagaaatcaaat
atttataaaggaaaaattatccgaattgaacctagtttagaagcagtatttgtagattat
ggagtcgagcgacacggatttcttcctataaaagaaatctcacacgaatattttctttct
tcgccagcttcctataataagctcaatattaaggaaattttatgtgaaggacaagaacta
attgtacaaatagataaagaagaaagaggaaataaaggtgctgcattaactacttttatc
agtttagcaggtagctatttagtactcatgccaaataatcccaaatccagcggaatctca
agacgaattgagggaaacgatcgtatcggattaaaagaaattctatctactttagaatta
cctgaaggaatgagtttaattattcgtaccgctggtctgggaaaatctatcgaggcatta
gaatgggatttaacttctcgcttgcaacattggaaaaccatcaaaaataccgcagcaaag
cacttggctccttttttaattcatcaggatagtaatgttattgtacgtgcatttcgagat
tatttacgcccagatataggagaaattttaattgataatcctaaaattatgcatttagct
aaagaacatataacttctttaggtcgcccagatttcactaaaaaaataaaattttataat
ggcgatattcctttatttagtcactaccagatagaatctcaaatagaatcagcgtttcaa
cgagaagtaagattaccatctggaggctccattgttatagacactaccgaagctctaaca
gcaatcgatattaattctgcacgctctactaaaggagcagacattgaagatacagctttt
cataccaatttagaagcaactgatgaaatagcgcgtcagttacgtcttcgtgatgtaggt
ggattaattgttatagatttcatagacatgactccaattcgacatcaacgagaaattgaa
aatagcttaaaaatagcggtgcatcaggatcgcgcccgcattcagataggacatatttct
aaatttggtctattagagctatctagacaaagattaagtacgtcgcttggagaatcaagt
catcatatttgcccgcgttgcagcggaacaggcagcattcgtgacaatgaatctctttct
ctatcaattttacgtttaattgaagaagaagcactaaaagataatacttatgaagtacat
gctatcgttcctgtagctatcgcctcatatttactcaatgaaaaacgaaaagccattagc
gatatagaacaacgacaaaaaggagtacgtgccattatagtgccttatgcacaaatgaaa
actccaaattacgaaatacgacgtatacgtaaaggagaaacatacaataaaccaagctat
ttgttagcaacaaatcaagactatgaaataacccaatcatcaggagaaatgatttcttca
aattatacttatactacagaaaaactacagtcaacagcgcgtgccctatcaaatttaata
cctgattataataaaattttttattatgcaaatcacaaattacaatttaaatcaaaaaga
gaaatatcatggtttgataacattaaaaatcgttgccataaaatactcagtttatgtatc
ataagttataataatttaaaacaaacattatcaaaaataatcaccaaaaacattcattgg
atatacattaaaattatatatcaacacaaaccatctcagagcgtaaatcattgtttcaag
tcatatccgaatttttattctaaatataatagcaataataataaaaaaaattatacccat
aatacaaaaaacaaaactaatttaaataatcataaaaaaataacagatttttttaataaa
aataataataacaatactaagtctctatcgaaatttaatgacaatatttacaagtccata
cctactccctactacactaatccaacacaatctattgaaaaaataacgaaaaaaccacct
atacagaaatataaaaaaagatatatgcacaacgttaaacatcagcacttaaataaggca
catcactcagaatattggatatggcgaaaactttaccaatctgaacacaccttgcatatg
aaagtaaataaagaaccagtagtatctataaatatcaattcctacaaaacatataatgca
gcagattcccgcatttttgacaaaaaacccaccattgctgaagtcaactccaatactatt
gataattctacaaatattcatacctctgatttgacatcaaatactctatatattccaaaa
agtaccaatactatcattcattatccacatgctaaccatagcattgctgaacagcacaac
aacatatctcagcaagacaacaataaccatacacaactaattaggcgtatacgtcgatct
tctcgtcattttcgtataaattttaaatatcggttacaacaacgtcgagaaaaaattacc
tcaaagaaaatgcagtaa
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