Brevibacillus choshinensis: JNE38_00735
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Entry
JNE38_00735 CDS
T07271
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bchs
Brevibacillus choshinensis
Pathway
bchs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bchs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JNE38_00735 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bchs03400
]
JNE38_00735 (mfd)
Enzymes [BR:
bchs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JNE38_00735 (mfd)
DNA repair and recombination proteins [BR:
bchs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JNE38_00735 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QRG67800
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All DBs
Position
120516..124064
Genome browser
AA seq
1182 aa
AA seq
DB search
MQVIINPMKQDPNVGTIVAGLEKGLHEQLVSGLAGSARQTLMATLKQMTDRPVCVVTHNM
YQAQKVYEDLIELVPSDQVLLYPGNELIGSELAIASPEMLAQRIHVFNRLARGFTGFLVA
PFAGLRRLVVPPHVWKESQIKLAVGEELDIESFLLRCIELGYERVDMVERKGELSVRGGI
IDLYPIDSEWPVRIELFDVEIDSIRTFDMLSQRSLESVQTYLIGPAKEMIASTPLLQESA
VRLEQKLGETVAKLKDGSAKEKVVERIGSDVERMSLGQRFPHLYSYVSVIYPTEDTLLSY
MPSDTLMIVDEPTRVLDTAAQLQKEEAEWLTGRIISGEYMANLSLSRTYEDIISTKKRQI
VYLSLFLRQSPKTQPQNIVNLTCRTMQNFHGQMNVLKTELARWQKSHDQIVFVAADLERA
KRLERVLHDYEMEADVLAEAVDTVPPGRPTIILGNLQTGFELPLNKLVVITEGEVFTAKQ
RKARKVQQTMNNAERIKNYLELKPGDYVVHVNHGIGKYLGIETKEILGIHKDYLHIQYAA
GDSLFVPIDQIDHVQKYVASEETQPKIYSLGGSEWKRVKNKVQSSVKDIAEDLIKLYASR
EAAVGHSFSVDTAEQREFEAMFPYQETPDQLRAIAEVKSDMERRRPMDRLVCGDVGYGKT
EVAIRAAFKAVMDGKQVAVLVPTTILAQQHYETFRERFADYPIRVEVLSRFRSRKEQNAT
LKGIKEGTVDVVIGTHRLLSKDLTFRELGLLIVDEEQRFGVSHKEKLKQLKTNVDVMTLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMDYSPALVREAIERELARDGQVFFL
YNQVQGIEQMAEQISMLVPDARIAVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGV
DIPNVNTLIIYNADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKE
FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFINTVGFDLYSQMLKDAIDELKGEVRQESA
TTVEINLQLDAYIPSMYITDSRQKIEMYKKFVAVSSLDDVDDLAEELLDRFGPVPKPVEN
LLTISRMRVYALQHHITEISQKNPDEIKLFLHPSQNNNIDGGALFALASSWSRRIGLSGG
QQITIAVKVKGLREDEGVQLVEKLLRQFHQVRKDTGTESPVS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtcatcattaacccgatgaagcaggatccgaacgtaggaacgatcgtcgctggt
ctggaaaaaggactgcatgagcagctcgtctccggtttggctggttctgcacggcagaca
ctcatggcgacgctgaagcaaatgacagatcgccccgtctgcgtcgtgacccataatatg
tatcaggcgcaaaaagtatatgaagacctgattgagctggtgcctagcgatcaagtattg
ctttatccggggaacgagctgatcggctccgaactcgctatcgccagtccggagatgctc
gcacagagaattcacgtgttcaaccgtttggcccggggctttacgggttttttagttgcg
cctttcgcgggcttgcgtcgattggtggtccctccgcatgtctggaaggaatcgcaaatc
aagctggctgtcggcgaagagctggacatcgagtcgtttttgctccgctgtatcgagctg
ggctacgagcgcgtcgatatggtcgagcgaaaaggcgagctgagtgttcgcggcggcatt
attgacctttatccgattgattctgaatggcccgtgcggattgagctgttcgatgtcgag
atcgactccatccgtacgtttgacatgctttcccagcgttctctggagtctgtgcagacc
tatcttatcggacctgccaaagaaatgattgcctcaaccccgctcttgcaagagtctgct
gttcgtttagagcagaagctcggtgaaaccgttgccaaattgaaggatggttccgcaaag
gaaaaggtggtagagcgtatcgggtcagatgttgagcgcatgagtctcggacaacgcttt
ccccatctgtactcgtacgtctcggtgatctacccgacggaagatacgctgttgtcctac
atgccgtcggatacgctgatgatcgtggatgagccgactcgcgtactggatacggcagct
cagctgcaaaaggaagaagcggaatggctgacgggacgtatcatttctggcgagtacatg
gccaatctcagcctgtcccgtacgtatgaagatatcatttcgacgaaaaagcgccagatc
gtttacctgtctttattcctgagacaatctcctaagacacagccgcaaaatatcgtcaat
ctcacctgtaggacgatgcagaacttccacggtcagatgaatgtactgaagacagagctg
gctcgctggcaaaagtctcatgaccagatcgtattcgtcgcagcggatttggagcgggct
aagcgcttggagcgagtcctccacgattacgagatggaagccgatgtgctggccgaagct
gtcgacactgtgccgccaggtcgtccgaccatcattctgggcaatctgcagaccggattt
gagcttcctctgaacaagctcgtggtcattaccgagggcgaggtctttacggccaagcag
cgcaaggccagaaaagtacagcaaaccatgaataacgccgagcgaatcaagaattacctg
gagctcaagccgggtgattacgtggtgcacgtcaaccacgggattggaaaataccttgga
attgaaaccaaggaaatactcggaattcataaagattacttgcatattcaatacgcggcg
ggagacagtctgtttgttcccatcgatcaaatcgatcacgtgcaaaaatacgtggcgagt
gaagaaacgcaaccgaagatctacagcttgggcggcagcgaatggaaacgggtcaagaac
aaagtgcaatcctccgtaaaagatatcgccgaagacttgatcaagctgtatgcatcccgt
gaagcggctgtggggcattccttttcggtggatacggcagagcagcgtgaatttgaggcg
atgttcccgtatcaggaaacaccggatcagctgcgcgcgattgccgaagtaaaatcggac
atggaacgccggcgccccatggatcgtcttgtatgtggggacgtagggtacgggaagaca
gaggtagccattcgcgcggcgttcaaggcagtgatggatggcaagcaggttgccgtactc
gtgccgaccaccattttggcccagcagcattacgagacgttccgcgaacgctttgcggat
tatccgattcgtgtggaggtactgagccgcttccgttcccgcaaggagcagaatgctact
ttaaaaggtatcaaggaaggcacagttgatgtggtcatcggtacccaccgtctgctctcc
aaggatctgacattccgcgagctcggactgttgattgtggatgaggagcagcgttttggg
gtgagccacaaggaaaagctgaagcagctgaagaccaacgtcgacgtcatgacgctgacg
gctacgccgatcccacgtacgctgcatatgtccatgctgggtgtacgcgatttgtcggtt
atcgagacaccgccggaaaaccgcttccctgtacagacgtatgtcatggactacagccct
gcattggtgcgtgaagcgatcgaacgggagctggcccgcgatggacaggtgtttttcctc
tacaaccaagtccaaggcatcgaacagatggcggagcaaatttccatgctcgtccccgat
gcgaggatcgctgtggcccacggtcagatgaacgaaagcgagctggaaggagtcatcctg
gacttcctggaaggcaatttcgacgtattggtaagcaccaccattattgagacgggtgtg
gacatcccgaatgtcaacacgctgatcatctacaatgctgacaaaatgggcttgtcccag
ctgtatcagctgcgcgggcgggtgggtcgttccaatcggatcgcgtacgcttactttacg
tatcagcgcgacaaggtgctgacagaggtagccgaaaaacgccttcaggccatcaaggaa
tttacagagctcggctctggattcaagatcgccatgcgtgacttgtccattcgtggtgcg
ggtaatttgctcggcgctgaacagcacggcttcattaatacggtcgggtttgatttgtac
agccagatgctgaaggatgccatcgatgagctgaaaggcgaagtgaggcaggagagcgcc
acgactgtggaaatcaacctgcagctggatgcctacattccatcgatgtacatcacagac
agccggcagaagatcgagatgtacaaaaagttcgtggcagtctcttcgctggacgacgtg
gacgatctggcggaagaattactcgaccgttttggcccggtgcccaagccggttgaaaat
ctcttgaccatttcccgcatgcgcgtgtatgccctgcagcaccacattacggaaatcagt
caaaagaatccggacgaaatcaaactgttcctgcatccgagccaaaacaacaacatcgat
ggcggagccttgtttgctcttgccagtagttggagccgcaggatagggctatcgggtgga
caacagatcacgattgctgttaaagtaaaagggttgagagaagacgagggcgtgcagctg
gtagagaagctgctgcgtcaatttcaccaggtgcgcaaagacaccggtacggagagccct
gtatcatag
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