Brevibacillus choshinensis: JNE38_17515
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Entry
JNE38_17515 CDS
T07271
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bchs
Brevibacillus choshinensis
Pathway
bchs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bchs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNE38_17515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bchs03019
]
JNE38_17515
03009 Ribosome biogenesis [BR:
bchs03009
]
JNE38_17515
Enzymes [BR:
bchs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JNE38_17515
Messenger RNA biogenesis [BR:
bchs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JNE38_17515
Ribosome biogenesis [BR:
bchs03009
]
Prokaryotic type
rRNA helicases
JNE38_17515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RelE
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QRG65420
LinkDB
All DBs
Position
complement(3476878..3478467)
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AA seq
529 aa
AA seq
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MTIFSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPL
VEKVSSANRVQAIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALRQGV
QIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIITQMPEERQTLLF
SATMPPEIKRLATRYMKQPQTIAVSREEVTAPLIEQVYYKVFDRNKVESLCRILDSEDVE
LGIIFCRTKRGVDELTEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFLIATDVAA
RGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMFIQKQTKA
QVLSRNVPSLEEVAERKQEQLREQLTSLLESDAIADMYQKVAETLVGQYPAEKVAAAALH
LAFHSEAGQTQEVEAYNFGETGAAKGMVRFFLNVGRNANMKPQDLVREISESVGIPGKAV
GRIDIFENFTFVEVPEEVAAFVYESLRQTRINGKRINLEPAKPRGAKRS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgacgattttttctgattttcctttacataaatctattcttcaagccatccatgacatg
gggtttgaagagccatcgccgatccaggcagcttgcattccaaaggtgctggatggcggt
gacctgattggtcaagctcagaccggtaccggtaagacggcagcctttgggattccgctg
gtggaaaaggtaagctccgctaaccgcgtgcaggcaatcgtgctgacgccgactcgcgaa
ctcgcgattcaagtggcgggagagcttttgcgcatctccaagtacaataaagtgcgcact
ctgcctatctatgggggtcaatccatcggccatcaaattcgtgcgctgcgtcaaggcgta
caaatagtggttgggacaccgggacgtgtgatggaccatcttcgccgcaagaccttgaaa
ttggatcatgtacataccctggtcctggacgaagcggacgaaatgctggacatgggtttc
atcgaggacatcgagacgatcattacgcaaatgccggaagagcgtcagacattgctgttc
tccgcaacgatgcctccagaaatcaagcgcttggcgactcgctatatgaagcagccgcaa
accatcgcggttagccgagaagaagtaacggctccattgatcgaacaggtgtattacaaa
gtatttgaccgcaataaagtagaaagcctctgccgcatactggacagtgaagatgtggag
ctgggcatcatcttctgccgcaccaagcgtggtgtggacgaactcactgaggttcttcaa
tcccgcggctacttggcggatggtttgcatggggacttgtcccaggcacagcgtgacaaa
gtcatgaatgcgttccgtgaaggctcgatcgagttcctcattgcgacggacgtggctgct
cgcggtatcgacgtcggcaacgtatcgcacgtcatcaactacgacattccgcaagactcg
gaaagctacgttcaccgcattggtcgtactggccgtgcaggccgcaaagggatcgcaatg
accctggtgactccgcgcgaggtaagacaaatgatgttcatccaaaagcaaaccaaagcg
caagtgctgtcccgcaacgttccttctctcgaggaagtggcagagcgcaagcaagagcag
ctgcgtgagcaattgaccagcctcttggagagcgatgcgatcgcagatatgtatcaaaaa
gtggcggaaactctggtaggccaatatcctgcagaaaaagtagctgctgcagcgcttcat
ctcgcattccacagcgaagcgggccaaacccaagaggtagaagcttacaactttggagaa
acaggtgctgccaaaggcatggttcgtttcttcttgaacgtgggacgaaatgccaacatg
aagccgcaagatctcgtgcgcgagatttccgaatccgtaggcatcccgggcaaagcagtt
ggccgcatcgacatttttgagaacttcacgtttgtggaagtgccggaagaagtggcggca
ttcgtatacgagtctctgcgtcagacacgtatcaacggcaaacgcattaatttggagcca
gcgaagccacgtggagccaagcgttcctaa
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