Brevibacillus choshinensis: JNE38_17980
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Entry
JNE38_17980 CDS
T07271
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bchs
Brevibacillus choshinensis
Brite
KEGG Orthology (KO) [BR:
bchs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bchs03032
]
JNE38_17980 (topA)
03400 DNA repair and recombination proteins [BR:
bchs03400
]
JNE38_17980 (topA)
Enzymes [BR:
bchs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JNE38_17980 (topA)
DNA replication proteins [BR:
bchs03032
]
Prokaryotic type
DNA Topoisomerases
JNE38_17980 (topA)
DNA repair and recombination proteins [BR:
bchs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JNE38_17980 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QRG65507
LinkDB
All DBs
Position
complement(3570011..3572089)
Genome browser
AA seq
692 aa
AA seq
DB search
MADTLVIVESPAKAKTIGKYLGSKYIVKASMGHVRDLPKSQTGVDVTRGFEPKYITIRGK
GDVLKALKDAAKKVKKVYLAADPDREGEAIAWHLAQYLGLDLDQPLRVVFNEITKDAIKE
AFKHPRHINMDLVNAQQARRILDRLVGYNISPILWKKVRKGLSAGRVQSVTVKLIMDRER
EIQQFIPEEYWTIASKLISNGKEFEAKFYGYGDEKIELKSEADVQEVYKRMADQPYLVQK
VTKRERKRNPAPPFITSSLQQEAARKLNFRTAKTMRIAQELYEGIDVGNKEGAVGLITYM
RTDSTRISATAQEEAKEYILEKFGPEYILSEPRTQAKNENAQDAHEAIRPTAVMRTPDEI
KEFLSRDQLRLYRLIWERFLASQMSSAVLDTMSVDIAAGEVTFRATGSKVKFPGFMKVYI
EGNDDGTEEESFLPPIEEGQRLEQKEIEPSQHFTQPPPRYSEARLVKTLEERGIGRPSTY
APTLETVQKRGYVALEEKRFVPTELGEIVITLMEEFFPEILDVEFTAHMENGLDNIEEGV
ANWVQVLDAFYGDFAKRVAFAEEEMKEVELKDEESDENCELCGRVMVYKLGRFGKFLACS
GFPECRNTKPIVKETGVKCPHCETGEIIERKSKKSRIFYGCNRYPECDFVSWDKPIARPC
PKCSSMLVEKKRKKQGVSVVCTKCDYQEEADS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggctgacacgctcgtaatcgtagaatcccctgcgaaagcgaaaaccattggaaaatac
ttgggtagcaaatatattgtcaaagcttctatgggtcatgtacgcgatctcccgaagagc
caaacaggtgtagacgttacacgtggctttgaacccaaatacataaccatccgcggcaag
ggcgacgtattgaaagccctgaaggatgccgccaaaaaagtgaagaaagtctatctggcg
gccgacccggatcgcgaaggggaagctattgcctggcatcttgcacaatacttggggctg
gatttggatcagccgcttcgtgttgtgtttaatgaaattaccaaggatgccatcaaggaa
gctttcaaacacccgaggcacattaatatggatttggttaatgcgcagcaggcacgccgc
atcttggacagattggttggttacaacatcagcccgattttgtggaaaaaagtgcgcaag
ggcctgagtgcaggtcgtgtacaatccgttaccgtgaaactgattatggaccgagaacgg
gaaattcaacagttcattccagaagagtactggacaatcgcgagcaagctgataagcaat
ggcaaagagtttgaagcgaagttttacggctatggagatgaaaagatcgagctgaagtcg
gaagcggacgttcaggaagtttacaagcgtatggccgatcagccgtacttggttcaaaaa
gtgacgaaacgggagcgcaaacgcaatccggcacccccatttatcaccagttccttgcaa
caggaagcagcccgcaagctgaatttccgtacggccaagacgatgaggatcgctcaggag
ctctatgaagggattgacgtcggcaacaaggaaggcgctgtcggtctgatcacttacatg
cgtacggactccacacgcatttccgcaaccgctcaagaggaagcaaaagaatacatcctg
gagaagtttggacctgaatacattttgtctgaaccgcgcacacaagcgaaaaacgaaaat
gctcaggatgcgcacgaggcgatccgtcctacggctgtgatgcggacgccagatgaaatc
aaagagtttttgtctcgtgatcagctgcgtctttatcgattgatctgggagcgtttcctc
gcgagtcaaatgtcttcggctgtattagacacgatgagtgtggacatcgctgcaggagaa
gtgactttccgtgcgacaggctccaaggtaaagtttcctggctttatgaaggtatatatc
gaaggaaatgatgacggaacagaggaagaaagcttcctgcctccgattgaagaagggcaa
aggctcgagcaaaaagagatcgaaccgtcacagcattttacacagccgcctccacgatac
tccgaagcacgtctggtaaagacgctggaggaaagagggatcggtcgtccttctacctac
gcccccaccctcgaaaccgtacaaaaacgcggctatgtcgccctcgaggaaaaacgtttc
gtccccaccgagctaggagagatcgtcatcacgctgatggaagaatttttccctgagatt
ctggatgtggaatttaccgcacatatggaaaatggcctcgataacatcgaagaaggcgtc
gcgaattgggttcaagtgcttgatgcgttttacggggacttcgccaaacgtgtagccttt
gcggaagaggaaatgaaagaagtcgagctgaaggacgaagaatccgatgaaaattgcgag
ctgtgcggacgtgtgatggtctacaaactcggtcgcttcggcaagtttctcgcatgctcc
ggattcccggaatgccgcaatacaaagccgatcgtaaaagaaacgggagtaaaatgccca
cattgtgaaaccggagagatcattgaacgtaaatctaagaagagccgtattttttacggc
tgcaaccgatatccggaatgtgattttgtttcatgggacaaaccgattgcccgtccttgc
ccgaagtgttccagcatgctcgtggaaaagaaacgcaaaaagcaaggtgtgagcgttgtt
tgcaccaaatgcgattatcaggaagaagcagattcctga
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