Baumannia cicadellinicola Hc (Homalodisca coagulata): BCI_0502
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Entry
BCI_0502 CDS
T00349
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bci
Baumannia cicadellinicola Hc (Homalodisca coagulata)
Pathway
bci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BCI_0502 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bci03021
]
BCI_0502 (rpoB)
03400 DNA repair and recombination proteins [BR:
bci03400
]
BCI_0502 (rpoB)
Enzymes [BR:
bci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BCI_0502 (rpoB)
Transcription machinery [BR:
bci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BCI_0502 (rpoB)
DNA repair and recombination proteins [BR:
bci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BCI_0502 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
UBA_RAD5A
DUF1350
Motif
Other DBs
NCBI-ProteinID:
ABF13801
UniProt:
Q1LSX7
LinkDB
All DBs
Position
507307..511329
Genome browser
AA seq
1340 aa
AA seq
DB search
MLYSYTEKKRIRKDFGKRSQVLDVPYLLSIQLESFQKFIERDNEGQHGLEAAFRSVFPIQ
SYSGNAELQYVSYHLGEPVFDVKECQTRGLTFSAPLRVILRLIIRDATTETPIKEQEVYM
GEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKIHSSGKVLFNARIIPYRGSWL
DFEFDQKDHLFVRIDRRRKLPATIILRALQLSTNQILDTFFEKVIFHLNDEHIQMELVPE
RLRGETASFDIIANGTIYVNKGRRITARHIHQLKIDSIDRINVPREYLVGKIIAIDYIHD
NTGEIIVPANIEITLEILDKLGKANFKRIETLFTNDLDHGAYISETLRIDSTRDRLSALV
EIYRMMRPGEPPTREAAENLFENIFFSEDRYDLSAVGRMKFNRALLREEIEGSGLLSKSD
IIEVMKKLIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRIGLVRVERAVKERLSLSDL
ESLMPQDIINAKPISAAIKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG
FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAKTNEYGFLETPYRLVHNSVVTEEIH
YLSAIEEGNFIIAQANTNLDDKGNFVEELVTCRHKGESGFFSREKVHYMDVSTQQIVSVG
ASLIPFLEHDDANRALMGANMQRQAVPTLRTDKPLVGTGMERIVAVDSGVTVVAKRGGIV
QYVDASRIVINVHSDEMYSGEAGIDIYHMTKYIRSNQNTCISQKPCVTLGELVERGNVLA
DGPSTDLGELALGQNMRIAFMPWNGYNFEDSMLVSERVVQKDCFTTIHIQELACMSRDTK
LGPEEITSDIPNVGEAALCKLDESGIVYIGAEVTSGDILVGKVTPKGETQLTPEEKLLRA
IFGEKASDVKDSSLRVPNGYSGTVIDVQIFTRDGVKKDKRTLEIEEMQLQQAKKDLTEER
RIFEAALFTRIRHVLGSDITNIDIVKILKLKREDWSQFNIKDNNKYCQLEQLAEQYYELN
KVFANKLEEKRRKITQGDDLSPGVLKIVKVYIAVKRQIQPGDKMAGRHGNKGVISKINPI
EDMPYDEKGIPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINKMLKQHKNAEQLR
QFIQKAYDIGDQVRQKVNLNLFSDQEILLLAENLKHGMPMATPVFDGAKEKEIKQMLQLA
ELPVSGQITLFDGRTGEPFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDCNHTMEPAMPES
FNVLLKEIRSLGINIELEKN
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgctttattcctacaccgaaaaaaaacgcattcgtaaagattttggcaaacgttcacaa
gtcttagatgtcccctatttactttctatacagcttgaatcttttcaaaagtttattgaa
cgtgataatgaaggtcagcatggactagaagctgcttttagatctgtgtttcccatacaa
agttatagtggtaacgctgaattacaatatgttagttatcacttaggtgagcctgtgttc
gatgttaaagaatgtcaaacaagaggtttaacattttctgctccactacgcgtaattttg
cgtcttatcattcgtgatgccacaacagaaactcctattaaagaacaagaagtatatatg
ggtgaaattcctcttatgacggaaaatggtacgtttgttattaatggaactgagcgtgta
attgtttctcagttacaccgtagtcctggtgttttttttgatagtgataagggtaagata
cattcatcaggtaaggttttatttaatgcacgtattattccttatagaggatcatggttg
gattttgaatttgaccagaaagatcacttatttgttcgtattgaccgccgccgtaaatta
ccggcaacgattatcttacgtgcattgcaacttagcactaaccaaattttagataccttc
ttcgaaaaagttatttttcatctaaatgatgaacatatacaaatggaactagttcctgag
cgtctacgtggagaaactgcttcatttgatattatagccaatggtactatatatgttaat
aaaggtcgtcgtattacagcacgtcatattcatcagttaaaaatagatagtatagatcga
attaatgttcctagagaatatttagtaggtaaaattatagcaatagattatattcatgat
aatactggtgaaattatcgtccctgccaatatagaaattacgctagaaatactagataaa
ttaggtaaagctaattttaaacgtattgaaacattatttactaatgacttagatcatggt
gcttatatttccgaaacattacggattgattcaactagagacaggcttagtgcactagtc
gaaatttaccgtatgatgcgtcctggtgagccaccaacacgtgaagcagcagaaaatctt
ttcgaaaacatttttttctcagaagatcgttatgatctatcagcggtaggtagaatgaaa
tttaatcgtgctcttttgcgtgaagaaatagaaggatcaggtctgttaagtaaaagtgat
attatcgaagtaatgaagaaactgatcgatattcgtaacggtaagggtgaagtagatgat
atcgatcatcttggtaatcgtcgtgttcgttctgtcggtgaaatggccgaaaatcaattt
agaattggtctagttcgtgttgaacgtgccgtaaaagagcgtttatctttaagtgatcta
gagagtttaatgccacaagatattatcaatgcaaagccaatctcagcagcaattaaagaa
ttttttggttccagtcagctatcacagtttatggatcagaataatccactttctgaaatt
actcataaacgtcgtatttccgcattaggacctggaggattaactagggaacgtgctgga
tttgaagtacgtgatgtacatccgactcattatggaagagtgtgcccaattgaaactcca
gaaggacctaacattggtttaataaactctctatcggtatacgcaaaaactaatgagtat
ggttttttagaaacaccatatcggcttgtacataacagtgtagtgactgaagagattcat
tatttatctgcaattgaagagggtaattttattatagctcaggctaatactaatcttgat
gacaaaggtaattttgtagaagagctagttacttgtcgtcataaaggggaatcagggttc
tttagtcgtgaaaaagtacattatatggatgtttctactcagcaaatagtttcagtaggt
gcctcgcttattccatttttagagcatgatgatgctaatcgagctctaatgggagctaat
atgcaacgtcaagctgtacctaccttgcgaactgataaaccattagtcggtactggtatg
gaacgtattgtagctgttgactctggagtaacagttgtagctaaacgtggtggcatagtt
cagtatgttgatgcttctcgtattgttattaatgttcactctgatgaaatgtattcaggt
gaggcaggtatcgatatttaccatatgacaaaatatattcgttctaatcagaatacatgc
attagtcaaaagccttgcgtcacattaggggaactagtagagcgtggtaatgtcttagct
gatggtccatctaccgacctaggagaattagcattaggacaaaatatgcgtattgccttc
atgccttggaatggttataactttgaagattctatgctcgtatctgaaagagtagtgcaa
aaagattgttttacaacaattcatatccaagaattagcatgtatgtcacgtgatacgaaa
ttagggcctgaggaaattacgtcggatatacctaatgtaggtgaagcagcattatgtaaa
ttggatgagtcaggaattgtctatattggagctgaagttactagtggagacatattagta
ggtaaggtaacccctaaaggtgaaactcaactgacaccagaagaaaaactattgcgtgct
atttttggtgaaaaagcatcagatgttaaagattcatcattaagagtaccaaatggttat
tcgggtacagtgatagacgtacaaatttttacccgtgatggtgttaaaaaagataagaga
actctagaaatagaggaaatgcagttacaacaagcaaaaaaagaccttacagaagagcga
cgtatctttgaagctgctttatttactcgtattcgtcatgtactaggttctgatattact
aatatagatatagttaaaattttaaaattaaaacgagaagattggtctcaatttaatatt
aaagataacaataaatattgtcagttagaacaactagctgagcagtattacgagttaaat
aaagtatttgcaaataaattagaagaaaaacggcgcaaaattactcaaggtgatgattta
tcccctggtgttttaaaaatagtaaaagtttatattgctgttaaaaggcaaatacaacct
ggtgataaaatggccggtcgtcacggtaataaaggggttatatcaaaaatcaacccaatt
gaagatatgccatatgatgaaaaaggtataccagtagatatagttttaaacccattaggt
gtgccttcacgtatgaatatcggtcagattcttgaaactcatttaggaatggctgctaaa
ggtattggtgataagatcaataagatgttgaaacaacataaaaatgctgaacaactacgt
caatttattcaaaaagcttatgatataggcgatcaagtaagacaaaaggttaatctaaat
cttttttctgaccaagaaatattattgttagcagaaaacttaaaacatggtatgccaatg
gcgactccagtgttcgatggcgctaaagaaaaagaaatcaaacaaatgttgcaattagca
gaattaccagtatctggtcaaatcactttatttgatggtaggactggtgaaccattcgaa
cgacaggtgacagtaggttatatgtatatgttaaaacttaatcatcttgttgatgataag
atgcatgctagatcaactggctcttatagtttagtaactcagcaaccacttggtggtaag
gcacagtttggtggtcagcgttttggtgaaatggaagtttgggcattagaagcttatggt
gcggcatatactttacaagagatgctaacagttaaatcagatgatgttaatggtcgcaca
aaaatgtataaaaatattgttgattgtaatcacactatggagcctgcaatgccagaatct
ttcaacgttctattaaaggaaattcgctctttaggtattaacattgagctagaaaaaaat
taa
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