Baumannia cicadellinicola Hc (Homalodisca coagulata): BCI_0503
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Entry
BCI_0503 CDS
T00349
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bci
Baumannia cicadellinicola Hc (Homalodisca coagulata)
Pathway
bci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BCI_0503 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bci03021
]
BCI_0503 (rpoC)
03400 DNA repair and recombination proteins [BR:
bci03400
]
BCI_0503 (rpoC)
Enzymes [BR:
bci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BCI_0503 (rpoC)
Transcription machinery [BR:
bci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BCI_0503 (rpoC)
DNA repair and recombination proteins [BR:
bci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BCI_0503 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ABF13977
UniProt:
Q1LSX6
LinkDB
All DBs
Position
511418..515644
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLFKLLKAQAKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTYLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIHHLLKNMDLEQECEQLREEIVDVSSETKRKKLTKRIKLLESFVHSGNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRVITSSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLEICGLATTIKAAKKMVEREEAVVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCAAYNADFDGDQMAVHIPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRVNSKGEGMILTGPKEAEKIYHAG
IAELHARVKVRITEYEKIDDNELVEKKQIIDTTIGRAILWMIVPKGLPFDLVNQVLGKKS
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAHKAEIIDDAENE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSTEVVLNCHGKEELQVSFN
NIFMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEEDCGTLSGIVMTPVIEGGDVKESLRERVL
GRVTTENILQPGKTDILVKRNTLLNEQWCDILEEHSVDNIKVRSVVTCDADFGVCAYCYG
RDLARGHLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAFRAAAESSIQVKNHGILCL
VNAKFVINSANKIVITSRNAELKISDEFGRTKESYKVPYGAIMAKGDGANIISGETIANW
DPHTMPVITEVNGFIRFTDMIEGQTIIRQTDELTGLSSIVILDTAERTSSGKDLRPALKI
VDANQQDILIPGTDMPAQYFLPGKTIVQLEDGTKITSGDTLARLPQETSGTKDITGGLPR
VADLFEARIPKEPAILAEASGIISFGKDTKGKRRLVISSLHSNDSYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVHAVTRYIINEVQDVYRLQGVRINDKHIEVIVRQM
LRKATIINAGGSDLLEGEQVEYSRIKIINRQLKSEGRQEITYVRDLLGITKASLATESFI
SAASFQETTRVLTEASVAGKRDDLRGLKENVIVGRLIPAGTGYAYHQERARYSKHREEAL
DMQQITAADEASANLAELLNSSLTNHKH
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatctatttaaactgctgaaagcacaagctaagactgaagaatttgatgcaata
aaaattgcactagcctcgcctgatatgattcgttcctggtcttttggtgaagttaaaaaa
cctgaaacgataaattaccgtacttttaaacctgaacgtgatggtttattctgtgcacgt
atttttggacctgttaaagattacgaatgtctatgcggtaagtataagcgtttgaaacat
cgtggtgttatttgtgagaagtgtggtgttgaagttacccagacaaaagtccgtcgtgaa
cgaatgggacatattgagcttgcttctccaacagcacatatctggtttttgaaatctttg
ccttcacgtattggattattgctggatatgcctttacgtgatatagaacgtgtgctgtat
tttgagtcttacgttgtggttgaaggtggtatgacttatttagagcgtaatcaaatatta
acagaagagcaatatttagatgccctagaagaatttggtgatgaatttgatgcaaaaatg
ggcgcggaggcaattcatcatttattgaagaacatggaccttgagcaagaatgcgaacaa
ttaagagaagagatcgtagatgtttcttcggaaacaaaacgtaaaaaactaactaaacgc
attaaattactcgagtctttcgtacattcaggtaataaacctgaatggatgattttaaat
gtactaccagtattaccacctgatttacgcccattagtaccgctagatggtggacgtttt
gctacatctgatcttaatgacttatatcgtcgtgtaataaatagaaataaccgtcttaaa
agattactagatttatcagcaccagatattattgtgcgtaatgaaaaacgtatgctgcag
gaagctgtagatgcattgctagataatggaagacgtggtcgtgttattactagttctaat
aaacggcctttaaaatctttagcagatatgattaaaggaaaacaaggtcgttttcggcaa
aatttactcggaaagcgagttgattactctggacgttccgtaattacagtaggtccatat
ttacgtttacatcaatgtggtcttccgaagaaaatggcacttgagctatttaagcctttt
atttatggtaagcttgaaatttgtggccttgcgacaactattaaagctgcaaaaaaaatg
gtagaacgtgaagaagctgttgtttgggatgttctagacgaagttattcgcgagcatcca
gtaatgcttaatagagcacctaccttacatcgattaggaatacaagcatttgaaccagtt
ctagtagaaggtaaagcaattcaactacacccattagtttgtgctgcatataatgctgat
tttgatggtgatcaaatggcagtgcatattccgttgacgcttgaagcacagttagaagct
cgtgcactcatgatgtctactaataatattttatcacctgctaatggcgagcctattatt
gtaccatcacaagatgtagtactaggattatactatatgactcgtgatcgtgttaatagt
aaaggtgaaggtatgatattaactggtcctaaggaggcagaaaagatttatcatgctgga
atagctgaactacatgcacgtgttaaagtacgtattactgaatacgaaaagattgatgat
aatgagttagttgaaaaaaaacagatcatagataccactattggaagagctatactatgg
atgatagtaccaaaaggtttaccttttgatttagttaaccaggtactgggaaaaaaatct
atttctaaaatgttaaacacttgttatcgtatactaggtctcaaaccaactgtaattttt
gctgatcaaattatgtatactggttttgcttatgctgcccgttctggttcatcagttggc
atagatgatatggtcatacctgctcataaagcagaaattatagatgatgctgagaatgaa
gtagctgaaattcaggaacaatttcagtctggtttagtaactgccggtgagcgatataac
aaagttattgatatatgggctgcggcaaatgaacgtgtagcaaaagctatgatggataat
ctttcgactgaagttgtcctcaactgtcatgggaaagaagaattacaagtttcatttaat
aatatttttatgatgtctgattctggtgcacgaggttcggcagcgcagattagacagtta
gcaggtatgcgtggactaatggctaaacctgatggttcaattattgaaactccaattact
gctaacttccgtgaaggtttaaatgtactacaatactttatttctacacatggtgctcgt
aaagggttagctgatactgcacttaaaacagcaaattcaggttatctaactcgtagatta
gttgatgttgcacaagatctagttgttaccgaagaagattgcggaactttatctggtatt
gttatgactccagtcatcgaaggtggtgatgttaaagaatcattacgtgaaagagtacta
ggtcgtgtcacaactgaaaatatactacaaccaggtaaaactgatattcttgtaaaacgg
aatacactacttaatgaacagtggtgtgatatattagaagaacattctgtagataatatt
aaggttcgttcagtagttacctgtgatgctgattttggggtatgcgcatattgctatgga
cgtgatttagcacgtggtcacttagtaaataagggagaagcaattggagtgattgctgca
cagtctattggtgaacctggtacacaattgactatgcgtactttccatattggtggtgca
gccttccgggctgcagcagaatcaagtattcaagtcaaaaatcatggaattctttgcctt
gttaatgctaaatttgttattaatagtgctaataaaatagttatcacctctcgtaatgct
gagttaaaaattagcgatgaatttggccgtacaaaagaaagttataaggtaccatatggt
gctataatggctaaaggtgatggagctaatattattagtggagaaactattgcaaactgg
gatcctcatacaatgccagttattactgaagtcaatggttttattcgatttactgatatg
attgaaggccagacgattattcgccaaactgatgagctgactggtttatcttctatcgtc
atattagatactgcagaaagaactagtagtggtaaagatttacgaccggctcttaaaatt
gttgatgctaatcaacaagatatacttattcctggtaccgacatgccagcacaatatttt
ttgcccggtaagactatagtacagttagaggatggtactaaaattactagtggtgatact
cttgcacgtttaccgcaagaaactagtggaactaaagatattacgggtggtttaccgcgt
gtagctgatttatttgaagcaagaataccaaaagaaccagctattttggccgaagctagt
ggtattatttcttttggtaaagatactaaaggaaaacgacgcttagtaatatcatcatta
catagtaatgatagttatgaagaaatgattcctaaatggcgtcaactaaatgtatttgaa
ggagaacgtgtagaacgtggtgatgttatttctgatggaccagaatcaccgcatgatatt
ctacggttacgtggtgtacatgcagttactcgctatatcattaatgaagtacaagacgta
tatcgtttacaaggtgtaagaattaatgataagcatattgaagttattgttcgtcaaatg
ctacggaaagctactattattaatgctggtggatctgatttactagaaggtgagcaggta
gaatactcaaggattaagattattaatcgccagttaaaaagcgaaggaagacaagaaatt
acctatgtacgtgatctattaggaataacaaaagcatcattagcaacagaatcttttata
tcagctgcttcatttcaggagactactcgtgtactcactgaagcttctgtagcaggaaaa
cgtgatgatttacgtggtctaaaagaaaatgttattgttggacgattaatacctgccggt
accggttatgcttatcatcaggagcgagcacgctattctaagcatagggaagaagcatta
gatatgcaacaaataacagctgctgatgaagcttctgctaatttagctgaattattaaat
tctagcctaactaatcataagcattaa
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