Candidatus Palibaumannia cicadellinicola BGSS: IM45_1105
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Entry
IM45_1105 CDS
T03277
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bcib
Candidatus Palibaumannia cicadellinicola BGSS
Pathway
bcib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IM45_1105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcib03021
]
IM45_1105
03400 DNA repair and recombination proteins [BR:
bcib03400
]
IM45_1105
Enzymes [BR:
bcib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IM45_1105
Transcription machinery [BR:
bcib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IM45_1105
DNA repair and recombination proteins [BR:
bcib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IM45_1105
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AIN47420
UniProt:
A0A088MYI4
LinkDB
All DBs
Position
562093..566118
Genome browser
AA seq
1341 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIERDPEGQYGLEAAFRSVFPIQ
SYSGNAELQYVSYRLGDPIFDVKECQIRGVTFSVPLRVILRLIIYEREVPETSMKEQEVY
MGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDSDKGKIHSSGKVLFNARIIPYRGSW
LDFEFDQKDHLFVRIDRRRKLPATIILRALHLSTNEILETFFEKVVFNINEHKLEMELVP
ERLRGETASFDIEANGTIYVEKGRRITVHHIRKLKKDYINKIKVPVEYIIGKVIAKDYIS
NNTNEIIATANTEVSIELLHKLSAAGFHCIEILFTNDLDHGAYISDTLRIDPTKDRLSAL
VEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRALLRQEIEGSGLLSKD
DIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLSD
LDTLMPQDIINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA
GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVHNGIVTEEI
HYLSAIEEGNFVIAQANTNLDENGNFIDDLVTCRNKGESSLFSHEQVNYMDVSTQQVVSV
GASLIPFLEHDDANRALMGANMQRQAVPTLRTDKPLVGTGMERIVAVDSGVTAVAKRGGI
VQYVDASRIVININSNEMYSDEAGIDIYHMTKYIRSNQNTCISQKPCVSLGERVERGDVL
ADGPSTDLGELALGQNMRIAFMPWNGYNFEDSMLVSERVVQDDRFTTIHIQELACISRDT
KLGPEEITADIPNVGEAALCKLDESGIVYIGAEVTSGDILVGKVTPKGETQLTPEEKLLR
AIFGEKASDVKDSSLRVPNGFSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLTEE
LRIFEAGLFTRIRDVLISDGIDINIDKISKLSSEQWLKFGLQNVDKYHQLEQLTEQYHEL
KKVFDKRLEEKRSKITQGDDLSPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINP
IEDMPYDEKGVPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINTMLKQHQDIIKI
REFIQKAYNVGDNVRQKVDLNLFSDEEVLRLATNLKNGMPIATPVFDGATEKEIKELLQL
GELPTSGQITLFDGRTGEKFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHTMEPGMPE
SFNVLLKEIRSLGINIELEEE
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgaaaaaaaacgtattcgtaaagattttggaaaacgtccacaa
gtgttagacgttccttatcttctttcgatacaacttgattcttttcagaagttcattgaa
cgtgatccggaaggtcaatatgggctagaagctgcttttaggtccgtattcccgatacag
agctatagcggcaacgctgaattacaatatgttagttatcgtttaggagatcctatcttc
gatgttaaagagtgccaaattcgtggtgtgactttttctgtaccattacgcgtaatatta
cgcttaattatctatgagcgtgaagtaccagaaacttcaatgaaagaacaagaagtatac
atgggtgaaattccccttatgactgagaatggtacatttattattaatggaactgaacgt
gttatcgtttcacaattacaccgtagtcctggtgttttttttgatagcgataagggtaag
atccactcatcaggtaaagttttatttaatgcacgtattattccttatcgaggatcttgg
ctagattttgaatttgatcaaaaagatcacttatttgttcgtatagatcgccgtcgtaaa
ttaccagctacgattattctacgtgcgttgcacttaagtactaacgaaattctagaaact
ttctttgaaaaagtagttttcaatattaatgaacataagttagagatggaactagttcct
gaacgtttacgtggagaaacagcttcatttgatattgaagcaaatggtactatatatgta
gaaaaaggccgtcgtattaccgtacatcatattcgcaagcttaaaaaagattacattaat
aaaatcaaagtacccgtcgaatacattatcggtaaagtgatagcaaaagattatattagt
aataatacaaacgaaataattgctactgctaatactgaagtttctattgaattattacat
aaactaagtgcagctggatttcactgtattgaaatcttatttacaaatgacttagatcat
ggtgcctatatttcagatacattgcgcattgatcctacaaaagatcgtcttagtgcatta
gtagaaatctatcgtatgatgcgtcctggtgaaccaccaacccgcgaagcggctgaaaat
cttttcgaaaatctatttttttcagaagatcgttatgatttatctgctgttggtcgaatg
aaatttaatcgtgcattgttacgtcaagagatagaaggttctggtcttttgagtaaagat
gacatcatagaagtaatgaagaaactaattgatattcgtaacggtaaaggtgaagtagat
gatatcgatcatcttggcaatcgtcgtatccgttctgttggtgaaatggcagaaaatcaa
tttagagtgggtttagttcgcgtagaacgtgctgttaaagaacgtttatctctaagtgat
ttggatactctgatgccgcaagatattattaacgctaaaccaatttcagcagctgtgaaa
gaattttttggttctagccaattatcgcaatttatggaccaaaataatccattatctgag
attacccataaacgccgtatttctgcactaggaccaggtggccttactcgtgaacgtgct
ggattcgaagtacgtgacgtacatccaactcattatggtcgtgtttgtcccatcgaaacc
ccagaaggacctaatattggtctaataaactctctctctgtatatgcacaaacgaacgag
tatgggtttctagaaacaccatatcgtcgtgtacataatggtattgttactgaagaaatt
cattatctttctgcgattgaagagggtaacttcgttattgcacaggcaaatactaatcta
gatgaaaacggtaattttattgatgatctagttacctgtcgtaataagggtgaatctagt
ttatttagccatgaacaagtgaactatatggatgtttcaactcaacaggttgtttctgtt
ggtgcttctcttattccttttctagagcacgatgatgctaatcgcgctttaatgggtgcc
aatatgcaacgtcaagcagtaccgactttacgtacagacaagccattagtaggtactggt
atggagcgtatagtagcagttgactctggagtcactgctgttgctaaacgtggcgggata
gttcaatatgtggacgcttcgcgtattgtgattaatattaatagtaatgaaatgtattca
gatgaagctggaattgatatttatcacatgacgaaatatattcgttctaatcagaatacc
tgtattagtcagaagccttgtgtatctttaggtgaacgagttgagcgcggtgatgtatta
gctgatggtccatctactgatctaggagaactagccttagggcaaaatatgcgtatagca
ttcatgccatggaatggttataactttgaagattctatgttagtctccgaacgtgtcgta
caagatgatcgttttacaactattcatatacaggaattagcttgtatatcacgcgataca
aaacttggtcctgaagagattactgctgatataccaaatgtaggtgaagcagcgctctgc
aaactagatgaatcaggaatagtctatattggtgcagaagttacgagtggtgacatacta
gtaggtaaggttacaccaaaaggtgaaactcagctgactccagaagaaaaactattacgc
gctatttttggcgaaaaagcttcagacgtgaaagattcttcattacgagtacccaatggt
ttctctggtacagtaatcgatgtacaggtttttactagagacggagtagaaaaagacaag
cgagcactagaaattgaagagatgcagcttaaacaggctaaaaaagatctaacagaagaa
ttaagaattttcgaagcgggtttattcactcgtattcgtgatgtactaatctctgatggt
atagatattaatattgataaaatatcgaagttaagtagcgagcaatggcttaaatttggt
ttacaaaatgtagacaaataccatcaactagaacaattaacagaacagtaccatgagttg
aaaaaagtttttgataaaagattggaagaaaagcgtagtaagattactcaaggagatgat
ctctcccctggtgttctcaaaatagtaaaggtatacctagcagtaaaaagacaaattcag
cctggcgataaaatggctggtcgtcacggtaacaaaggtgtgatttctaagatcaatcca
attgaagatatgccttacgatgaaaagggcgtaccagttgatatagtactaaatccactg
ggtgttccatcacgtatgaatattggtcagattcttgaaacacatttaggaatggctgcg
aaaggtatcggtgataaaattaatactatgcttaagcagcaccaagatataatcaaaata
cgtgaatttattcagaaagcttataatgtgggcgataatgtacgacaaaaagttgatctt
aatctattttccgacgaagaagtactacggctagctacaaacttaaaaaatggtatgcca
atagcaacaccagtgtttgatggtgctacagagaaagaaattaaagaactcctacagtta
ggagagttgccaacatctggtcaaataactctctttgatggtaggaccggtgaaaaattt
gagcgtcaagtaacagtaggctatatgtatatgcttaaacttaatcatctagttgatgat
aaaatgcatgcgcgttcaactggatcttatagcttagtgactcaacaacctctgggtggt
aaagcacagttcggtggtcaacgtttcggtgaaatggaagtttgggcactagaagcttat
ggtgcagcatatacgttacaagaaatgttgaccgtcaagtcagacgatgttaatggtcgt
accaaaatgtataaaaatattgttgatggtaatcacactatggaaccaggaatgccggaa
tctttcaacgtcttattaaaagaaatacgttctctgggtattaatattgaactagaagaa
gaataa
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