Candidatus Palibaumannia cicadellinicola BGSS: IM45_1107
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Entry
IM45_1107 CDS
T03277
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcib
Candidatus Palibaumannia cicadellinicola BGSS
Pathway
bcib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IM45_1107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcib03021
]
IM45_1107
03400 DNA repair and recombination proteins [BR:
bcib03400
]
IM45_1107
Enzymes [BR:
bcib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IM45_1107
Transcription machinery [BR:
bcib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IM45_1107
DNA repair and recombination proteins [BR:
bcib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IM45_1107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
AIN47421
UniProt:
A0A088N278
LinkDB
All DBs
Position
566221..570441
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQAKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVESGMTNLECNQILTEEQYLDALEEFGDEFDAKM
GAEAIHALLKNIALEQECEQLREELEETTSETKRKKLTKRIKLLEAFVQSGNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLERRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHIPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRVNGKGEGMVLTGPKEAERIYRLG
IAELHARIKVRITEYEKNDHGNWIENTHIIDTTIGRAILWMIVPKGLPFVLVNQVLGKKS
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMIIPSKKADIINDAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSTETVINSNGVEERQVSFN
NIFMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTQDDCGTIAGIIMTPVIEGGDVKEPLRERVL
GRVTAEDLLKPGSADVLVERNTLLNEQWCDVLEENSVDNIKVRSVVTCDTDFGVCAYCYG
RDLARGHLVNNGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAFRAAAESSIQVKNQGTIRL
INAKYVINISNKIVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGSKIMGGEIVANW
DPHTMPVITEVDGFIRFTDMIDGQTITRQTDELTGLSSIVVLDTAERNSGGKDLRPALKI
VDLNNHDVLIPNTDMPAQYFLPGKTIIQLEDGTKIHSGDTLARLPQETSGTKDITGGLPR
VADLFEARRPKEPAILAEVSGIISFGKDTKGKRRLVISPLNSSDTYEEMIPKWRQLNVFE
GEHVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIISAGNSDFLEGEQVEYSRIKIKNLQLKHEGKREITYVRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKSDELRGLKENVIVGRLIPAGTGYAYHQERARNRHHREEFN
VQQITADEASANLAELLNLGLSNHDH
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttactgaaatttctgaaagcacaagctaagactgaagagtttgatgcgata
aaaatcgcactagcttcaccagacatgatccgttcctggtctttcggtgaagtaaaaaaa
cctgagactattaattaccgcacttttaaacctgagcgtgatggtttattttgtgcacgt
attttcggaccggttaaagattacgagtgtttatgcggtaaatacaaacgtctgaagcat
cgtggtgttatttgcgaaaaatgtggcgttgaagtgacccagacaaaagtgcgtcgcgag
cgtatgggacatatcgagcttgcttctcctacggcacatatttggtttttaaaatcttta
ccatcacgtataggtttattgctagatatgccactacgtgatatagagcgtgtactctac
ttcgagtcctacgtagtagttgaaagtggtatgactaatttagaatgtaatcaaatctta
actgaagagcagtatttagatgccctcgaagagtttggtgatgagtttgatgctaaaatg
ggcgcagaagctattcatgctttgttaaaaaatatagctcttgagcaggaatgtgaacaa
ttacgagaagaactagaagaaactacctcagaaacgaaacgtaagaaacttactaaacgt
attaagttactagaagcatttgtacaatcaggaaataagcctgaatggatgatcttaaat
gtactaccagtattgccgccagatctacgtccgttagtaccgctagacggtggacgtttt
gctacatcagatctcaatgatttatatcgccgtgttattaatcgtaataatcgtcttaaa
cgattacttgatttatccgcaccagatattattgttcgcaatgaaaaacgtatgttgcaa
gaagcagtagatgcattactagacaacggacgacgcggacgtgcaattacaggctctaat
aagcgtccgctaaagtctttagcagatatgataaaaggaaagcaaggtcgttttcgtcag
aatttattaggtaaacgcgtcgattactctggccgttcagtaattactgtcggaccatac
ctacgtctacatcaatgtggtctaccaaagaagatggcccttgaactatttaagcctttt
atctatggcaagctagaacgccgtggtcttgcaacgactattaaagctgcaaagaaaatg
gttgaacgtgaagaagcagtggtttgggatattttggatgaagtaattcgtgaacatccg
gtaatgttgaatcgtgcgccaactttgcatcgtctgggtatacaagcatttgaacctgta
ctaattgaaggtaaagctattcaattacatccattagtttgtgctgcatataacgcagac
tttgacggcgatcaaatggcagtacatattccattaacacttgaagcacaattagaagct
cgagctttaatgatgtctactaataatattttatcaccagcaaacggtgaacctattata
gtaccatcacaagatgtcgttttaggtttatactatatgactcgtgaccgcgttaatggt
aaaggtgaaggtatggttcttactggacctaaagaagcggaacgtatttatcgtcttgga
atagcagagttacatgctcgtattaaagtacgtattacggaatatgagaaaaatgatcat
ggtaactggattgaaaacacacacattatagacacaacaattggacgagctatactatgg
atgatagttccaaagggattaccttttgtactggttaaccaggtgcttggtaaaaaatct
atctctaagatgttgaatacctgttatcgtatattaggtcttaaacctacggtaattttt
gctgatcaaattatgtatactggttttgcctatgctgctcgttctggttcatcagttggt
attgatgatatgattataccttccaagaaagcagatattatcaatgacgctgaagcagaa
gtagctgagattcaagagcaattccaatccggtttagtgactgctggtgaacgctacaac
aaagtaattgatatatgggctgctgctaatgaacgcgtagctaaagctatgatggataat
ctttctactgaaactgttattaatagtaatggtgtagaagaaaggcaggtatcatttaat
aatatttttatgatgtcagactctggtgcacggggatctgctgcacagattaggcagtta
gcaggtatgcgtggcttaatggcaaaacctgatggttcaattatagaaactccgattaca
gctaatttccgtgagggtttaaacgttttacaatactttatttctacacatggtgcacgt
aaaggtttagcagatacagcattaaaaacagcaaattctggttatctgactcgtcgttta
gtagatgtagcacaagatcttgtagtgactcaagatgattgtggtactattgcaggtatt
attatgaccccagtgatagaaggtggcgacgtaaaagaaccattgcgcgaacgtgtacta
ggtcgtgtcacagcagaagatctattgaaacctggtagtgctgatgttcttgtggaacgt
aatactctactcaatgagcaatggtgtgacgtactagaagaaaactctgttgataatatt
aaagttcgttcagtcgttacctgtgacacagactttggtgtctgtgcctattgttatggt
cgtgacttagcacgtggtcatttagttaataatggtgaagctatcggtgttatagctgca
caatctattggtgaacctggtactcagctaactatgcggacttttcatatcggtggagct
gccttccgtgctgcggctgaatcgagcattcaagtcaaaaatcaaggtactattcgtctc
atcaacgctaaatacgtaattaatattagtaataaaatagttattacttctcgcaatact
gaactaaagttaatcgatgaatttggccgaactaaagaaagctataaagtaccatatggt
gcagtgatggcaaaaggtgatggatcaaaaattatgggtggggaaatagttgcgaactgg
gatccacataccatgcctgtgatcactgaagttgacggttttattcgttttactgatatg
atcgatgggcagactattactcgccagaccgatgaacttactggtttatcatctatcgtc
gtattagatacagccgaaagaaatagtggcggtaaagatttaagaccagcgctgaagatt
gttgatctaaataatcatgatgtgcttatcccaaatactgatatgcctgcacaatatttt
ctacctggtaagaccattatacagttggaagatggaactaaaattcatagtggtgatacc
ttagcacgtttgccgcaagaaactagtggtactaaagatattactggtggtctaccgcgt
gtagcagatttattcgaagctcgtagacctaaagagccagctattttagctgaagtgagt
gggattatttcttttggtaaagatactaaaggaaaacgtcgtctagtaatatcaccgtta
aatagcagtgacacttatgaagagatgattcctaaatggcgtcagcttaacgtgtttgaa
ggtgaacacgtagaacgcggtgacgtgatctctgatggaccagaatctccgcatgatatt
ttacgtttacgtggtgtacatgctgtgactcgctatattgtaaatgaagtacaagatgtt
tatcgtttacaaggagtcaaaataaatgataagcatattgaagtaattgttcgtcagatg
ctgcgtaaagctactattattagtgctggtaattcagattttttagaaggtgaacaagta
gaatattcacgtattaagattaaaaatcttcagttaaaacacgaaggcaaaagagaaata
acttatgtacgcgatctgctaggtataactaaagcatcgttagctacggaatcatttata
tcagctgcttctttccaagaaactacacgcgtgctcacagaagcagctgtagcgggcaaa
agcgatgaattacgcggtctaaaagaaaatgttattgtcggtcggcttattccggctggt
acaggttatgcatatcatcaagaacgtgcccgcaatcgtcaccatagggaagagtttaat
gtacagcagattactgctgatgaagcgtcagctaatctcgcggaactattaaacttagga
ttaagtaaccacgatcactaa
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