Candidatus Palibaumannia cicadellinicola BGSS: IM45_443
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Entry
IM45_443 CDS
T03277
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bcib
Candidatus Palibaumannia cicadellinicola BGSS
Pathway
bcib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM45_443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcib03021
]
IM45_443
03019 Messenger RNA biogenesis [BR:
bcib03019
]
IM45_443
Transcription machinery [BR:
bcib03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IM45_443
Messenger RNA biogenesis [BR:
bcib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IM45_443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AIN47100
UniProt:
A0A088MXK3
LinkDB
All DBs
Position
complement(235488..236747)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELVTIGEKMGLENLARMRKQDIIFATLKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLMQNIAQSITYNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLMNKLAMTKTNDEFFDMMKRY
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttaccgaattaaaaaatacgccagtttcggagttagtcacaatcggcgagaag
atggggctcgaaaacctagcccgcatgcgtaaacaagacatcatcttcgccacacttaag
caacatgcaaaaagtggagaagatatcttcggcgatggcgtactggaaatactgcaagac
ggatttggctttttgcgctctggtgacagttcttacctagccggtccggatgatatatat
gtttcccccagccagattcgccgttttaacctgcgtaccggcgatactatttctggaaag
attcgtccgccaaaagaaggcgagcgctattttgcgctgttgaaggtaaacgaggtaaac
tacgataagccagaaaatgcccgtaataagattttatttgaaaatctgacgccattacac
gctaactcgcgtctacgcatggagcgtggaaatggttcgacggaagatttgacggcccgt
gtactagacttggcatcacctattggacgtggtcaacgtggtttaatagtagcaccgccg
aaagcaggtaaaacaatgctgatgcaaaatattgcacaaagtattacctataactatcct
gactgcgtactaatggtcttgttaatagacgaacgtccagaagaagtaacagaaatgcag
cggttagttaaaggtgaagtgatagcgtcaacatttgacgagccagctacgcgccatgtg
caagtagccgaaatggtgatcgagaaagcaaagcgcctcgttgagcacaaaaaagatgtc
atcatcttgttagattctattacacgtcttgcgcgcgcctacaatactgtagtccctgct
tcaggcaaagttttgacaggtggtgtagatgctaatgccctgcatcgtccgaaacgtttc
tttggtgcagcacggaatatagaagagggtggcagtttgaccattattgctactgcgctg
attgatactggttcaaagatggacgaagtaatttatgaagaatttaaaggtactggtaac
atggaattacacttgtcgcgtaaaattgccgagaagcgtgttttcccggctatcgattac
aaccggtctggtacccgtaaagaagaattgcttactactcaggaagaactacagaagatg
tggattttacgtaaaataatccatccgatgggtgaaatcgacgcaatggaattcttgatg
aataaattagcgatgactaaaacgaatgatgaattctttgatatgatgaaacgctattaa
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