Candidatus Palibaumannia cicadellinicola BGSS: IM45_980
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Entry
IM45_980 CDS
T03277
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bcib
Candidatus Palibaumannia cicadellinicola BGSS
Pathway
bcib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM45_980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcib03019
]
IM45_980
03009 Ribosome biogenesis [BR:
bcib03009
]
IM45_980
Enzymes [BR:
bcib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IM45_980
Messenger RNA biogenesis [BR:
bcib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IM45_980
Ribosome biogenesis [BR:
bcib03009
]
Prokaryotic type
rRNA processing factors
IM45_980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIN47360
UniProt:
A0A088MYE3
LinkDB
All DBs
Position
504587..507097
Genome browser
AA seq
836 aa
AA seq
DB search
MMKRMLINATQQEELRVALVDGQRLYDLDIESLGHEQKKANIYKGIITRIEQSLEAAFVD
HGAERHGFLPFKEISREYFPINYSSNSRINIKDVLREGQEIIVQVDKEERGNKGAALTTF
ISLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSLLELPEGMGLIVRTAGIGKSAEA
LQWDLSFRIKHWQAIKKAAESRPAPFLIYQESNVIVRAFRDYLRPDIGEILIDNPKMLDL
AKEHITLLGRPDFTSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEAL
TAIDINSARSTRCGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMMQVRHQREV
EHCLREAVHQDRARIQIGRISRFGLLELSRQRLSSSLSESSHHICPRCCGTGTLRDNESL
SLAILRIIEEETLKENTHEVHAIVPVPIASYLLNEKRAAVNAIEKRQGGVRAIIVPNDQM
QTPHYVVLRIRKGEEGTTLSYLLPQLYGAEKMHLAEEFNAERKRPEQPAIAAFVRQDSRI
IREQTTVIDAPIRNLFGRLMSSLKSLVSAPLPSTLEQKVTEKEMMHNQDINNKSKRRQNS
NCIHHYQHNSNNHLYTHQETSYEEQNQKHLFIQTESKITHEEDLIMAQNEFTCRKERRSQ
ELKATEASVFEREKLEVPQINLGNRNTDNQLIQTILPRRQRRALHRKISVLNCHEAEIIV
PKQTVNTTNTTNSSTTSLTNTAENTVNREYYRSRSRRSLRHLRVSGQRRRRYRNERYPLS
SPVPLNRAVFSPEMASGKVWVSYPVNPIERKEQEVIRVQSAQNVSDIELRVKRAIS
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaagaatgttaattaatgccactcaacaggaagagttgcgcgtagccttagta
gatggccagagactctatgatttagatattgaaagcttggggcatgaacagaaaaaagca
aatatatacaagggtataattacccgcattgaacaaagtcttgaagcagcatttgtcgat
catggtgctgagcgtcatgggttcctaccttttaaagaaatttctcgtgaatattttccg
attaactattcttctaacagtcggataaacattaaggatgtactgcgtgaagggcaagaa
atcattgtacaggtagataaagaagagagaggtaataaaggcgcagcacttactaccttc
attagtctagctgggagttatcttgttttgatgcctaataatcctcgagccggaggaatt
tcgcgtcgtatcgaaggagaagatcgtactgagctaaaagaagctctatcattgttagaa
ctaccagaaggtatgggactgatagttcgtacggcaggcatcggcaagtcagctgaagca
ctacaatgggatctatccttccgtattaaacactggcaggctattaagaaagctgctgag
agtcgtccagcaccatttttaatctatcaagaaagtaatgtcattgtgcgtgcgtttcgt
gattatcttaggcctgacatcggtgaaattctgatagataacccaaaaatgttagattta
gctaaagaacatattaccttattaggtcgtccagattttaccagtaaaattaagctctat
agtggcgaaattccgctttttagtcactatcagatcgaatcacagattgagtcagccttc
caacgtgaagtacgtttaccttctgggggttcgattgtcatcgatacgactgaggcgcta
acagcaatcgatattaactcagcgcgttccacccgttgcggcgatattgaagaaactgcc
tttaatactaacctagaagccgcagacgaaattgctcgtcagttacgcttacgagatctt
ggaggtttaattgttatagattttatcgatatgatgcaggtacgtcatcaacgcgaagta
gaacattgcctgcgtgaagcagtgcatcaggatcgtgcccgtattcaaattggacggata
tctcgctttggtctgttggagctttctcgccagcgcctgagttcatcattaagtgagtct
agtcatcacatatgtccccgctgctgtggtactggtactcttcgtgataacgaatcattg
tcacttgctatcctacgtatcatcgaagaggaaacgctaaaagagaatactcatgaagta
catgctatcgtgccggtgcctatagcatcttatttgctgaatgaaaagcgcgcggcagtt
aatgctatagagaagcgccaaggtggagtgcgggctattatcgtgcctaatgatcaaatg
cagactccgcattatgttgttcttaggatccgaaaaggtgaagaaggaacaacacttagc
tatttgctaccgcaactatatggtgcggaaaaaatgcatctagctgaggagttcaatgct
gaacgaaaacgtccagagcaacctgctatagcggctttcgtacgacaagattcgcgaata
atcagagaacaaaccacagtgatcgacgcgcccattcgtaacctttttggtagattgatg
tctagtttaaagtctttagtcagcgcaccactaccgtccaccttagaacaaaaggttacg
gaaaaagaaatgatgcacaatcaagatattaataataaaagtaaacgtaggcaaaatagt
aattgtatccaccactatcagcataatagcaataatcatttatatactcatcaggaaacg
agttatgaagaacaaaatcagaaacatctattcattcagacagagtcgaaaataacccat
gaagaagaccttataatggcacaaaacgagtttacgtgccgaaaagagcggagatctcag
gaactaaaggctactgaagcatcagttttcgaaagagaaaaactagaagtaccccaaata
aacttgggtaatcgtaatactgataatcaactaatacagacaatattaccacgtcgccaa
cgccgtgcattacatagaaaaatctctgttcttaattgtcatgaagcagaaatcattgta
cctaagcagacagtaaatactaccaatacgactaatagctctaccacatctttgactaat
accgctgagaatacagtgaatagagagtattatcgcagtcgatcacgcaggtcactgcgt
catctacgtgtcagcgggcaacgtcgtcgtcgttatcgtaacgaacgttatccactctct
tcgccggtaccattgaaccgtgcagtattttcaccagaaatggcgtcgggcaaagtttgg
gtcagctatccggtgaatcctatagagcgaaaagagcaggaagtaattagagtacaatcc
gctcagaatgtctcagatattgaattgcgcgtaaaacgtgcgatatcatga
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