KEGG   Candidatus Palibaumannia cicadellinicola B-GSS: AB162_449
Entry
AB162_449         CDS       T04544                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bcig  Candidatus Palibaumannia cicadellinicola B-GSS
Pathway
bcig03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bcig00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AB162_449 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bcig03021]
    AB162_449 (rpoC)
   03400 DNA repair and recombination proteins [BR:bcig03400]
    AB162_449 (rpoC)
Enzymes [BR:bcig01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AB162_449 (rpoC)
Transcription machinery [BR:bcig03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AB162_449 (rpoC)
DNA repair and recombination proteins [BR:bcig03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AB162_449 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 ApbA_C
Other DBs
NCBI-ProteinID: AKZ66035
UniProt: A0A0K2BL48
LinkDB
Position
455171..459394
AA seq 1407 aa
MKDLLKLLKAQANTEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIESGMTTNLECNQILTEEQYLDALEEFGDEFDAQ
MGAEAIFNLLKNIDLEQECELLREELEEITSETKRKKITKRIKLIEAFIQSGNKPEWMIL
NVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRML
QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLNQCGLPKKMALELFKPFIYGKLERRGIATTIKAAKKMVEREDSVVWDMLDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHIPLTREAQLE
ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRERVNCKGEGMILTGPKEAECIYHA
GIAELHARVKVRITEYHKNDNDELIEKKIICETTIGRAILWMIVPKGLPFTLVNQVLGKK
SISRMLNTCYRVLGLQPTVIFADKIMYTGFAYAARSGSSVGIDDIIIPTKKADIIDEAET
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAQAMMDNLSTEKVTNSHGVEELQVSF
NNIFMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCNTLSGIDMTPVIEGGDVKESLRERV
LGRLTAEDVIKPGSKNILVKRNTLLNEQWCNILEENSVDNIKVRSVVTCDTNFGVCAFCY
GRDLARGNLVQKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAFRAATESSIQVKNNGTIH
LINAKFVINSSNKIVITSRNTELKLIDIFGRTKESYKVPYGAVIAKRNGSEIISGEIVAN
WDPHTIPIITEVDGFISFTDMIDGQTITRQTDELTGVSSIVVLDSSERTSSGKDLRPALR
IVDENNKDVLIQGTDMSAQYFLPGNTIVQLEDGTKITSGDTLARVPLETSGTKDITGGLP
RVADIFEARRPKEPAVLAELSGIISFGKDTKGKRRLVISQLDDGGDTYEEMIPKWRQLNV
FEGERVERGDIISDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVR
QMLRKATIINSGGSDFLAGEQIEYSRIKITNNKLKIEGKKEISYVREILGITKASLATES
FISAASFQETTRVLTEAAVAGKIDELRGLKENVIVGRKIPAGTGYAYHKERTIHRNNKHR
SEIQQQKMTVDEASANLAELLNSSQNI
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagatttactaaaattgctgaaagcacaagctaacactgaagagtttgatgctatt
aaaattaccttagcttcaccagatatgattcgttcatggtcttttggtgaagttaaaaaa
cctgaaactatcaattaccgtacttttaagcctgagcgtgatggtttattttgtgcacgc
atttttggaccagtaaaagattacgagtgtttgtgcggtaaatataaacgtctaaaacat
cgtggcgtaatatgcgaaaaatgtggtgttgaagtcactcaaacaaaagtacgtcgggag
cggatgggacatatagagctagcttctcctactgctcatatctggtttttaaaatcttta
ccatcaaggattggtttattattagatatgcctcttagagacatagagcgtgtattatat
tttgaatcatacgtagtaattgaaagtggaatgactactaatttagagtgcaatcaaata
ttaactgaagagcagtatttagatgcattagaagaattcggtgatgaatttgatgcacaa
atgggcgcagaagcaatttttaatttattaaaaaatatagatcttgagcaagaatgcgaa
ctattaagagaagagctagaagaaattacatcagaaactaaacgtaaaaaaatcactaaa
cgtatcaagttaatagaagcatttatacaatcaggtaataaacctgaatggatgatatta
aatgtgttaccagtattaccaccagatttgcgtcctttagtaccactagatggtggacgt
tttgctacatcagatctaaatgatttatatcgccgtgttattaatcgtaataatcgtctt
aagcgattacttgatttatcagcaccagatatcatcgttaggaacgaaaaacgtatgcta
caagaagcagtagatgcattactagataatggacgacgtggtcgtgctattactggttct
aataagcgtccgctaaaatctttagctgatatgattaaaggaaagcaaggtcgttttagg
caaaatctactaggtaaacgcgtggactattctggtcgttcagttattactgtaggacca
tacctacatttaaatcaatgtggtttacctaaaaaaatggcactggagttatttaaacct
tttatttatggcaagcttgaacgtcgtggtattgctactactataaaagctgctaaaaaa
atggtagaacgtgaagactcagtagtttgggatatgttggatgaagtcattcgcgaacat
ccagtaatgctcaatcgtgcacctaccttacatcgtcttggtatacaagcatttgaacca
gtacttatagaaggtaaagcaattcaattacatccattagtttgtgcagcatataacgca
gactttgatggtgatcaaatggctgtacatattcctttaacacgtgaagcacaattagaa
gctagagctttaatgatgtctactaataacatactatcacctgcaaatggagaaccaata
atcgtaccatcacaagatgtcgtattaggtctatactatatgacacgtgagcgtgtaaat
tgcaaaggtgaaggaatgattcttactggacctaaagaagctgaatgtatttatcatgct
ggaattgcggagttacatgcgcgtgttaaagtacgtattactgaatatcataaaaatgat
aatgacgagttaatagaaaaaaaaataatttgtgaaacaacaataggacgagctatcctt
tggatgattgtaccaaaaggattaccttttacattagtaaatcaggttcttggaaaaaaa
tctatttctagaatgttgaatacttgttatcgggtgctaggtcttcaacctacagtaatt
tttgctgacaaaattatgtatactggttttgcttatgcagctcgttctggatcctctgtt
ggcattgatgatattattatccctacgaaaaaagctgatattatagatgaagcggagaca
gaagtagcagaaattcaagaacaatttcagtctggtttagtaacagctggtgaacgttat
aacaaagtaatagatatatgggctgcagctaatgaaagagtagctcaagctatgatggat
aatctgtctactgaaaaagtcactaatagtcatggagtagaagaattacaggtatcattc
aacaatatttttatgatgtctgattctggtgctagaggttcagctgcacaaattaggcaa
ttggctggaatgcgtggtcttatggctaaacctgatggttcaattattgaaacaccaatt
actgctaattttcgtgaaggtctgaatgtcttacaatattttatttctacacacggagca
cgtaaaggtctagcggataccgcacttaaaacagcaaattctggttatcttacccgtcgt
ttagtagatgtcgcgcaagatctagtagttactgaagatgattgtaatactttatccggg
attgatatgacccctgttattgaaggcggtgatgtaaaagaatcgttacgcgaacgcgta
ttaggtcgtcttacagcagaagatgtaattaaaccaggtagtaaaaatattttggtaaaa
cgtaatacgctgctaaatgagcaatggtgtaatattttagaagaaaattcagtagataat
attaaggttcgttcagttgttacctgcgatactaattttggcgtatgtgcattttgctat
ggacgtgacttagcacgaggtaatttagttcaaaaaggtgaagctatcggtgtaatagct
gcacaatctatcggtgaacctggtactcagcttacaatgcggacctttcatattggtgga
gcagccttccgtgctgctactgaatctagtattcaagtaaaaaataatggtacaattcat
ctgataaatgctaagttcgttattaatagtagtaataaaattgttattacatctcgtaat
actgagcttaaacttatcgatatttttggtagaactaaagaaagctataaggtgccatat
ggtgcagtaatagcaaaaaggaatggatcagaaataattagtggagaaatagtggctaat
tgggatccacatactatccctattattactgaagtagatggttttattagttttactgat
atgattgatggtcagacgattactcgtcagacagatgaacttactggtgtatcatctatt
gtagtattagattcttctgaaagaactagtagtgggaaagatttacgaccagcactaaga
attgtagatgagaataataaagatgtactaattcaaggtacagatatgtctgcacaatat
tttctacctggtaatactattgtgcagttagaagatggaactaaaattactagtggtgat
actttagctcgtgtaccactagaaactagtggtactaaagatattaccggtggtctacct
cgtgtagctgatatatttgaagctaggagacctaaagaaccagcagtattagctgaatta
agcggaattatttcatttgggaaagatactaaaggaaaacggcgtttagttatctcgcag
ttagatgatggcggtgatacttatgaagaaatgattccaaaatggcgtcagcttaatgta
tttgaaggtgaacgtgtagaacgtggtgatattatttctgatggccccgaatctcctcat
gatattctacgtttaagaggtgtacatgctgtaacacgctatattgttaatgaagtacaa
gatgtttacagattacaaggtgttaaaatcaatgataagcatattgaagttattgttcgt
caaatgttgcgtaaagctactattattaattctggtgggtcagattttttagccggtgaa
cagatagaatactcacgtattaaaataacaaataataagcttaaaattgaaggaaaaaaa
gaaatcagctatgttcgtgagatactcggtatcacaaaagcttccttagctacagagtca
tttatatccgccgcttcttttcaggaaactacacgagtattaactgaagctgctgtagca
ggtaaaattgatgagctacgaggtctaaaagaaaatgttatcgttggacgaaaaattcca
gctggaactgggtatgcttatcataaggaacgtactattcatcgtaataataagcataga
tcagaaatacaacaacaaaaaatgactgtcgatgaagcatcagcaaatttagctgaactt
ttaaactctagtcaaaatatatag

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