Candidatus Palibaumannia cicadellinicola B-GSS: AB162_571
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Entry
AB162_571 CDS
T04544
Symbol
deaD
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bcig
Candidatus Palibaumannia cicadellinicola B-GSS
Pathway
bcig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB162_571 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcig03019
]
AB162_571 (deaD)
03009 Ribosome biogenesis [BR:
bcig03009
]
AB162_571 (deaD)
Enzymes [BR:
bcig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB162_571 (deaD)
Messenger RNA biogenesis [BR:
bcig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB162_571 (deaD)
Ribosome biogenesis [BR:
bcig03009
]
Prokaryotic type
rRNA helicases
AB162_571 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
bCoV_SUD_C
Motif
Other DBs
NCBI-ProteinID:
AKZ66148
UniProt:
A0A0K2BM73
LinkDB
All DBs
Position
complement(600459..602246)
Genome browser
AA seq
595 aa
AA seq
DB search
MSVVNISFAKMGLNTFILDALTELGYETPSPIQAECIPYLLAGRDLLGIAQTGSGKTAAF
ALPFIHNINLQLNAPQILVIVPTRELAVQVGEACSYFAKYIKSVKVVTLYGGQRYDVQLR
FLKQGSQVVVGTPGRLLDHLKRGTLDLSNLKSLVLDEADEMLRMGFIEDVENILAQIPAK
HQTALFSATMPEVIRRITRRFMNNPKEVNIKSSISNRPDIHQSYWTVHGRCKNEALVRFL
EAEDFDAAIIFVRTKNATLEVSQSLEKHGYNSAALNGDMNQMLREQTLNRLKKGSIDILI
ATDVAARGLDVDRISLVINYDIPMDSESYIHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERLMKLTIPEVKLPTAELLSTRRLAKFAEKLKHQLTNIDMINLYRKMLVRLQQDENLDLE
TIAAVLLKMAQGKRPLIISQDNNIIENKQRSYLHGRRYANNIDYSEMDLYRIEVGRNDGV
EVRHIVGAIANQVDINSNYIGNIRLFASHSTIELPKGITCDMLSTFTRTRIMNKPINIQL
FGEAPVRCIERNNSSSMRRNLHSRRAVSGNVGRERRLVRHSSSIKRNNDNYDSNH
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtagttaatatctcttttgctaaaatgggacttaatacttttatccttgatgct
cttacggagctaggttatgaaaccccctctcctattcaggctgagtgcataccatattta
ttagctggtcgtgatttgttaggaattgctcaaacaggaagtggtaaaactgcagccttt
gccttaccatttatacataatattaaccttcagttaaatgcaccacagatcctagttata
gtacctactcgtgaacttgcagttcaagttggagaagcatgctcatattttgcgaaatat
ataaaaagtgtcaaagtagttactttatatggtggccagcgctatgacgtacagttacgt
tttttaaaacaaggttcacaggtagtagtaggtactccaggtcgtttattagatcatcta
aaacgtggcacattagatctatctaatcttaaaagtctagtattagatgaggcagatgag
atgttaagaatgggctttatcgaagatgttgaaaatatactagcgcaaattccggctaaa
catcaaactgcactattctcagctactatgccagaagtaattcgtcgtattaccagacgt
tttatgaataatccaaaagaagtaaatataaaatcgagtattagtaatcgtccagatatt
catcaaagctactggacagtacatggcagatgtaaaaatgaagcattagtacgtttttta
gaagcagaagattttgatgctgcaataatttttgttaggactaaaaacgccacattagaa
gtatcgcaatctctggaaaaacatggttataacagcgcagcgctcaatggtgatatgaat
cagatgctcagagaacaaacgttaaatcgtcttaaaaaaggtagtatagatatactgata
gctacagatgtagccgcacgtggtttagatgttgatcgcattagtctagtgattaattat
gatattcctatggactctgagtcttatatacatcgtataggccgtactggccgtgcaggt
agggctggtagggcacttctatttgtggaaaacagagaacgtagattactacgtaatatt
gaacgtttaatgaaactaactattccagaagttaaattacctaccgctgaattacttagc
actcgtcgtctagccaaatttgctgaaaaattaaaacatcaactaacaaacatagatatg
attaatctttatcgtaaaatgttagttagattgcagcaggatgaaaatttagatctagaa
actatagctgcagtgcttttgaaaatggctcaaggtaaacgtccactcattatatcccaa
gataataatattatagaaaataagcagcgtagttatttacatgggcgtaggtacgctaat
aatatagattatagtgaaatggatttataccgtattgaagttggtcgtaatgatggtgta
gaagtacgtcatattgttggggcgattgctaatcaagttgatataaatagtaattatatt
ggtaatattaggttatttgcatcacattctactattgagttacctaaagggataacttgt
gatatgttatctacgtttactcgtactcgtattatgaataaacctattaatattcaactg
ttcggtgaagcaccggttcgatgtattgaacgtaataatagtagtagtatgcgtcgtaac
ttgcactctaggcgtgcagtaagtggaaatgttggacgagaacgtcgtttagtgcgtcat
agttcaagtattaaaagaaataacgacaattatgattcaaatcactaa
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