Niallia circulans: C2I06_02695
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Entry
C2I06_02695 CDS
T06357
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bcir
Niallia circulans
Pathway
bcir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2I06_02695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcir03019
]
C2I06_02695
Messenger RNA biogenesis [BR:
bcir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C2I06_02695
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
DUF4453
pre-PUA_NIP7
Motif
Other DBs
NCBI-ProteinID:
AYV65867
UniProt:
A0A268FGR6
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All DBs
Position
complement(602447..604114)
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AA seq
555 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTFL
EKNVDKIKGLFITHGHEDHIGGIPYLLRQVNIPLYGGKLALALVRNKLEEHGLLRQTTMH
EIQEDDIIKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEVPNFTMSEKKVGKSIHDTFIKADGRLIFATFASNIYRLQQ
VTDAAVEFGRKIAVFGRSMEAAINIGLELGFIKAPKETFVDPQQINRLPANQVVILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSNPVPGNTLSVNKTINQLYRAGAEVIHGPL
NNIHTSGHGGQQEQMLMLRLIKPKFFMPIHGEFRMQKTHAQTAVDCGVKEENCFIMDNGE
VLALSSDSAQVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVVVVVSINMTDFRI
AAGPDLISRGFVYMRESGDLINDAQTLISKHLNKVMERKTTQWSEIKNEIIDTISPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgatcaaactgctgtatttgccctaggaggattaggggaaatc
ggtaaaaatacgtatggtgtccagtttcaagatgaaattattttaattgatgctggaatt
aaatttcctgaggacgagcttttaggaattgactatgttattcctgattatactttttta
gagaagaatgtagacaaaattaaaggcttatttatcacgcatggtcacgaagatcatatt
ggtggtattccttaccttttaagacaagttaatatccctctttacggaggcaaactggca
ttagcacttgttcgtaacaaattggaagagcatggattattgcgccaaacaacgatgcat
gaaattcaagaagacgatatcattaaatttagaaaaacatcggtttctttctttagaact
actcatagtatacctgattcctatgggattgttgtcaaaacaccacctgggaacattgta
cacactggagattttaaatttgactttacgccagttggggaacctgccaatttaacaaaa
atggctgaaatagggaaagaaggcgttttgtgcttattatctgatagtacaaatagtgaa
gttcctaattttactatgtcggagaaaaaagtcggaaaaagcatccatgatacttttata
aaggcggacggtagattgatttttgctactttcgcttccaatatttatcgcttacagcaa
gtaacagatgcagccgtagaatttggccgcaaaatagctgtttttggacgcagtatggaa
gctgctattaacatcggtttggaacttggctttataaaagcaccaaaagaaacttttgtt
gatccgcaacaaattaaccgactgccagctaatcaagtggtcatactttgtacaggaagc
caaggtgaaccaatggcagctctatcaagaattgctaatggtacgcatagacaaatccag
attatccctggtgacactgtggtattctcttccaatccagtaccaggtaatacattaagt
gttaataaaacaatcaatcaactttaccgagcaggtgcggaagtaattcatggaccactt
aacaatattcacacttctggtcatggtggtcaacaagagcaaatgctaatgcttcgatta
attaaacctaaattctttatgccaatccatggtgagtttagaatgcaaaaaacacacgct
caaactgctgttgattgtggcgtcaaagaagagaactgcttcattatggataatggtgaa
gtattagcactttcaagcgattcagcacaggttgcaggtaaaattccatctggaaatgta
tatattgacggaagcggaattggcgacattggaaatattgttttacgtgatcgtcgaatt
ctttcagaagaaggcttagtggttgtcgtggtgagtattaatatgactgattttagaatc
gccgctggacctgatcttatttcaagaggatttgtgtacatgcgtgagtctggtgattta
atcaatgatgcacaaacactaataagtaaacatttaaataaagtaatggaacgcaaaacg
acacaatggtcagaaataaagaatgaaataattgatactatttctccattcctatatgaa
aaaacaaaacgtcgcccaatgatccttcctattatcatggaagtataa
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