Niallia circulans: C2I06_03775
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Entry
C2I06_03775 CDS
T06357
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bcir
Niallia circulans
Pathway
bcir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2I06_03775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcir03019
]
C2I06_03775
Messenger RNA biogenesis [BR:
bcir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C2I06_03775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AYV69837
LinkDB
All DBs
Position
834198..835871
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AA seq
557 aa
AA seq
DB search
MKNDKIKLVALGGVGENGKNMFVVEVDEDIFVIDAGLMYPQNEMLGIDIVIPDIAYLKQN
KEKVKGIFLTHAHEDHIGGLSYILRDLDVPVYTTLLTAELTKEKMKEQDFKGQAQFEIVT
SKSVLTFASSKVSFFKTNHSIPDSIGIVIHTSEGAIVHTGDFKFDQTASDLYKPDYGEMA
KIGEEGVLALLSDSTNADKPGYSTTDFVVTQSLIEAFLHTKGRIIAACFATDLNRIQHII
DAAEKTNRKVAIIGKNLQRVLQIALKHNYLDVDEETIVTYNELQGYTQDQMVIITTGTKG
EPIEALQKMVKKNHKQVSIMEGDTVLFAASSFLGSEVFVGKTIDKLYRAGATLLAGYKTF
NSSNHGSQEELKFMINMMKPKFFLPIHGEYRVLKAHEKIAIECGVPPQNIYLPEQGEVLE
FKEDTLRVGGKIPAGNVLIDGSGVGDVGNIVLRDRKLLSQDGILTVVVTLNKAERKISAG
PEIITRGFVYVRESEKLLEEAADRVRDIVEKSISKDSFDWTGIKQDIRDTLNQFLYEKTR
RRPMILPIIMEVKPVRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatgacaaaataaagcttgtcgcactcggcggagtgggcgagaacggtaaaaat
atgtttgtagtcgaagtagacgaagatatatttgtaattgatgctggtttaatgtacccg
caaaatgaaatgctcgggatcgatattgttattccagatatcgcgtatttaaagcaaaat
aaagaaaaagtaaaaggaattttcttaacacatgcacatgaagatcatatcggaggttta
tcttatattttaagagacttagatgtaccggtttatacgactttattaacagctgaacta
acaaaggaaaagatgaaagagcaagatttcaaaggacaagcacaattcgaaattgtgaca
tcgaaatccgttctaacatttgcttcctcaaaagtgtccttctttaaaacaaatcatagt
atccctgatagcattgggattgttattcatacatcagaaggtgcaatcgtacatactggc
gacttcaaattcgatcaaacagccagtgatctttacaagccagattatggcgagatggca
aaaatcggggaagagggagtattagcgttattatctgacagtacgaatgcagataaacca
ggttattctacaacagattttgttgtaactcaaagcttaattgaggcgtttttacacaca
aagggtcggattattgcagcatgttttgcaactgacttaaatagaattcaacatattatt
gatgcagctgaaaaaacaaatcgaaaagtcgcgattatcggcaagaatttacaaagagtg
ttgcaaattgcgttaaaacacaattatttagatgttgatgaagaaacgatcgttacctat
aacgagcttcaaggatatacacaagatcaaatggtaattattactactggtacaaaaggc
gaaccaattgaagcactgcaaaaaatggtcaaaaaaaatcataagcaagtaagcatcatg
gaaggagataccgttttattcgcagcatcttctttcctaggcagtgaagtatttgttgga
aaaacaattgataaattatacagagcaggtgcaacacttctagcaggctataaaaccttt
aacagctccaatcatggcagtcaagaagaattaaaatttatgattaatatgatgaagcct
aaattctttttgccgatccatggcgagtatcgcgtgttaaaggcacatgaaaaaattgcg
attgaatgtggcgtaccaccgcaaaatatctaccttccagaacaaggagaggtgcttgaa
tttaaagaagataccctccgtgtaggcggaaaaattccagctgggaatgtattaattgat
ggcagcggtgttggtgacgttggaaatattgttttaagagaccggaagttattatcacaa
gacggaattttaacagttgtcgtaacattaaataaagcggaaagaaagatttctgctggt
cccgaaatcattacaagaggttttgtatatgttcgcgagtccgagaaattgctagaagaa
gcagctgaccgtgtaagagatattgtagagaaaagtattagtaaggacagctttgattgg
actggaattaagcaagatattagagatacgctaaaccagttcttatatgaaaaaacaaga
cgtagaccaatgatcttgccaattataatggaagttaagccagttagaagataa
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