Niallia circulans: C2I06_05540
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Entry
C2I06_05540 CDS
T06357
Name
(GenBank) ATP-dependent dsDNA exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
bcir
Niallia circulans
Brite
KEGG Orthology (KO) [BR:
bcir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcir03400
]
C2I06_05540
DNA repair and recombination proteins [BR:
bcir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C2I06_05540
Archaeal homologous recombinant proteins
C2I06_05540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
DUF1664
AAA_21
SMC_N
C2_SHIP1-2_2nd
Motif
Other DBs
NCBI-ProteinID:
AYV66378
LinkDB
All DBs
Position
1166168..1169308
Genome browser
AA seq
1046 aa
AA seq
DB search
MRPLKLTMQAFGPYARKEVIDFTVLGNRTMFVISGKTGSGKTTIFDGISYAIYGKASGED
RNGPELRSQFAEDSLLTEVSFEFKLKENRYLITRAPQQEKKKERGDGYTTIGAKAELYTF
DADGNEQLVASSIRDVDEKVKEIMQIDSNQFRQILMIPQGEFRRLLTSDSKEKENILQRL
FHTEMYKRIEEKLKEQAQALKKEVEQKVLLRTNALSKITAVYHQDLITQLESDRDNDVAI
LPLLKEEIVLMGEEIEKLQKKLDRKNTDRDSLKQHLYEAESILKQIKLKEELSTRLKELN
NQQKEYAETENKINMAQKAALLAQQEEICHHLKKQIDERNLEEKMIQFKLEKLNSQLKEA
EKQLNQEVEKEVERKQLSDYLVDLKNMEKDVFRFAEVEGKLSIIKKDLDSLGAKEALLQN
QRKEKEVMIQNVKERLKQLDGIKEMLLENKDKLRNLQSILEKMNDYLEVLNRTMRQKVDA
ESKEKMLDNTLRRVEDAKKLVEELENKWLINQSYILASSLKPDEACPVCGSVHHPDPATN
RNHEDNATEEDRKNAKKDFEAIEKEKAKAEAAWLEANTQWKLLEEDAQNKLMKVKDIYPD
FTNEESTIAVNTIKSELHRINTEQKRLEEQLTERDKMEQSLVSAERRYHELQSELEKIAV
VMRETTIQYTEHNTTWKNMKDAIPAELRDLSRYKTVWKESSLQLEKLEAQLKLAQEKVQM
TKENWQKESVRFESVQKQIKQLTDSLQTEREIFLESMTKQGFPTYRSYSDSKLLEKEVEK
LKESVQAYREECRSVSDRLKDLENTLKDITIPSMEDLQNKLKTIIEEANKLQEEHTNMLI
KQKENKEIYNQVISINRQVKDLENQYKLVGHLYDISRGQNAQRITFERYVLASFLDEILL
QANSRLNKMTSGRYQLVRKSDRSKGNVQSGLELLVFDQYTGQERHVKTLSGGESFKASLA
LALGLCDVVQNFAGGISLETMFIDEGFGTLDPESLDQAIETLMDIQNSGRLVGVISHVPE
LKDRMEIRLEVIAGQTGSTTRFEYLR
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgagaccattaaagctaacgatgcaagcatttggcccatatgcacgaaaagaagtcatt
gattttactgttttaggaaatcgtactatgtttgttatttcaggaaaaacgggatctggg
aaaacaacgatttttgacggaattagttatgcgatatacgggaaagcaagtggagaagac
cgcaatggtccagaattaagaagccagttcgctgaagactccttattaacagaagtcagt
tttgagtttaagttaaaagaaaaccgatatttaattacaagagcacctcagcaagagaag
aaaaaggaaagaggagatggatatacaactatcggtgctaaggcagaattatatacgttt
gatgcagatggaaatgaacaacttgttgcctcctctatccgtgatgtcgatgaaaaagta
aaagaaatcatgcaaatagatagcaatcagtttcggcaaattctaatgatccctcaagga
gaatttcgtagattgcttacatccgatagtaaagaaaaagaaaatatcctacagcgatta
tttcatacggaaatgtataagcggattgaagagaagttaaaggaacaagcacaagcacta
aaaaaagaagtagaacaaaaagtgctgttacgtaccaatgccttatcgaaaataacggca
gtttatcatcaggatctcatcactcaattggaatcagatcgtgataatgatgtggcgatt
cttcctctattaaaagaagaaattgtattaatgggagaagagatagaaaagctacagaaa
aaattggatcggaaaaacacagatcgagatagtttgaagcaacatttatatgaagcagaa
tctatattaaaacaaataaagcttaaagaagagctttctacccgtttaaaagaactaaat
aatcaacagaaggaatatgcagaaacagaaaataaaattaatatggcgcaaaaagcagcg
cttcttgcccaacaggaagaaatttgccatcatttaaaaaaacaaatcgatgaaagaaat
ttagaagagaaaatgattcaattcaagttagaaaagcttaatagtcaattaaaagaggca
gaaaaacaactaaatcaagaggtagaaaaagaagtagaacgaaaacagttgtctgattat
cttgtcgatttaaaaaatatggagaaggatgtctttcgttttgcggaagtagaaggaaaa
ctaagcattataaaaaaagatttagatagtctaggggctaaggaagcgttacttcaaaat
caacgaaaagagaaagaagtaatgatacaaaatgtgaaagaacgtttaaagcagttagac
ggaataaaggaaatgctgctagaaaacaaagacaagctccggaatttacaatctatctta
gagaaaatgaatgattatttagaagtactaaatcgcacgatgagacaaaaagtagatgcg
gaatcaaaggaaaaaatgctagacaatacactaagaagagtggaagatgcaaaaaaacta
gtagaagaactggaaaataaatggcttatcaatcaatcatatattttagcgagcagctta
aagccagacgaggcttgtccagtttgtggaagtgtacatcaccctgatccggcaacaaat
agaaatcatgaagacaatgcaacggaagaagaccgtaagaatgcgaaaaaagattttgaa
gcaatagagaaggaaaaggcaaaagcagaagcggcttggcttgaagcaaatacacagtgg
aaattattagaggaagatgctcaaaataagctaatgaaagtgaaagatatttatccggat
tttactaatgaagaaagtacgatagcagtaaatacgattaaaagcgaacttcacagaatt
aataccgaacagaagagacttgaggaacaattgacagaaagagataagatggaacaatct
cttgttagtgctgagcgccgctatcatgaattgcaatctgagcttgaaaaaatagcagtg
gtgatgcgagagactactatccaatacacagaacataataccacatggaaaaatatgaaa
gatgctattccagctgaactgcgtgatctatctcggtataaaacagtgtggaaggaaagt
tcgcttcagttagagaagttagaagctcaattaaagttagcgcaagaaaaagtgcagatg
acgaaagaaaattggcaaaaagaatccgtccgtttcgaaagtgtacaaaaacaaattaaa
cagctcactgatagcttgcagacagaaagagagatttttttagaaagcatgacaaagcaa
ggttttccaacctatcgctcttattcagatagtaaattgttggaaaaggaagtagagaag
ctcaaagagtcagtacaagcttaccgagaagaatgtcggtctgtttccgatcgattaaag
gatttagaaaatacgcttaaagatattaccattccgagcatggaagatcttcaaaataag
cttaagactattatcgaagaagcaaataaattgcaggaagaacatacaaatatgttaata
aagcaaaaagaaaataaagaaatatataatcaggtgatttcaataaatcgacaagtaaag
gatctggaaaatcagtataaacttgtcggtcacttatatgatatttccagaggacaaaat
gctcaacgaattacttttgaacgctatgtattggcttctttcctggatgaaatattgctt
caagccaatagcagattaaataaaatgacaagcggacgatatcagcttgtccgcaagagt
gaccgatcaaaaggaaatgtccaaagtggtttagagttactcgtatttgaccagtataca
ggccaagaaaggcatgtgaaaacactgtcaggaggagaaagctttaaagcttcacttgcc
ctagcgttaggattgtgtgatgttgtgcaaaactttgctggtggtatttcccttgaaacg
atgtttattgacgaaggtttcggtacattagacccagaatcattggatcaagcaattgaa
acattgatggacatccaaaattcaggtcgattagttggggtgatttcccatgttccagaa
ttgaaagatcgaatggaaattagactcgaggtaatcgctgggcaaacgggaagtactacg
cgatttgaatatttacgataa
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