Niallia circulans: C2I06_18090
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Entry
C2I06_18090 CDS
T06357
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bcir
Niallia circulans
Pathway
bcir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2I06_18090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcir03019
]
C2I06_18090
03009 Ribosome biogenesis [BR:
bcir03009
]
C2I06_18090
Enzymes [BR:
bcir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2I06_18090
Messenger RNA biogenesis [BR:
bcir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2I06_18090
Ribosome biogenesis [BR:
bcir03009
]
Prokaryotic type
rRNA helicases
C2I06_18090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
NAT10_TcmA_helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYV68633
UniProt:
A0A268FFR9
LinkDB
All DBs
Position
complement(3798976..3800424)
Genome browser
AA seq
482 aa
AA seq
DB search
MSEKGFHAFNLSNQIVKALDSLEYKNPTEVQNKVIPLVLEKIDLVVKSQTGSGKTASYGI
PICELVEWEENKPQALILTPTRELAVQVKDDFIDIGRLKRIKATAVYGKQPFAIQKTELK
QKTHVVVGTPGRVLDHIERGTLTLEKVNYLVIDEADEMLNMGFIEQVEAIIKALPKKRVT
MLFSATLPEAVKELSQRYMKTPIDIEIKANGLTTDKIDHTLIKVDEKEKFSLLQAVTIVQ
NPDSCIIFCRTKDRVDMLSDQLTDLGYNCDQIHGGMVQEDRLDVMNDFKRGEFRYLIATD
VAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGKKGRAITFMTPFEEKFLQEIEEY
IGFKIPIMAVPTEEEIADKRSDFEVKKNIEPAIKKAKNEKLNKHIMKLYFNGGKKKKLRA
VDFVGTIAKIDGVSAEDIGIITIMDTFSYVEILNDKGRIVLEKMKNTPIKGKSLKVYEAK
KD
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaaaggttttcatgcatttaatttaagtaatcaaatagtaaaagctctagat
agtttagaatataaaaatccaacagaggttcaaaataaagttatcccccttgtgttagag
aagattgatctcgtcgtaaaatctcaaaccggaagtggtaagacagcttcctatggaatt
cctatttgtgaattagtggaatgggaagagaataaaccacaagcgttaatattaacgcca
acaagggaacttgctgttcaagtcaaagatgactttattgatataggaagactgaagagg
attaaagcaacagctgtatatggaaagcagccgtttgccatccaaaaaacagaattaaaa
caaaaaacacatgtagtagttggtacaccaggtcgcgtattagatcatatcgagagagga
acattgaccttagaaaaagtgaactatcttgtgatcgatgaagcggacgagatgctaaac
atgggatttattgaacaggtagaggcaataatcaaggctttaccaaaaaaacgagtaact
atgttgttttcagcaacgttgccggaggcagttaaagagctatcgcaacggtatatgaaa
acacctattgacattgaaatcaaggcaaatggactgactaccgataaaattgaccatacg
cttataaaagtagacgaaaaagaaaaattctctcttcttcaagccgtaacgattgtacaa
aatcctgatagttgtattatcttttgtcggacaaaagatagggtggacatgctgagtgac
caattaacggacttaggatataactgtgatcaaattcatggcgggatggtacaggaagat
aggctagatgttatgaatgattttaaaagaggagaattccgctatctaattgcgacagac
gtagcagcaaggggcattgacattgataatatcacccatgtgatcaactatgatattcct
ttagaaaaggaaagctatgttcatcgtactggaaggactggacgggcaggtaaaaaaggc
agagccattaccttcatgactccgtttgaagagaagtttttacaggagatagaagaatat
attggctttaaaattcctataatggctgttcctacagaggaggaaattgccgataagcgg
tctgactttgaggtaaaaaagaatatcgagccggcgattaaaaaggcaaaaaatgaaaaa
ttaaataagcatattatgaaattatactttaatggcggcaaaaaaaagaagcttcgagca
gtcgactttgttggaacaattgcaaaaatagatggggtatcagcagaggatattgggatt
attacgatcatggatactttttcttatgtagagattttgaatgataaaggacgaatcgtg
ctcgaaaagatgaagaatacgccgataaaagggaaatccttgaaggtatatgaagcaaag
aaggactga
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