Niallia circulans: C2I06_19050
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Entry
C2I06_19050 CDS
T06357
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcir
Niallia circulans
Pathway
bcir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C2I06_19050 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcir03400
]
C2I06_19050 (mfd)
Enzymes [BR:
bcir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C2I06_19050 (mfd)
DNA repair and recombination proteins [BR:
bcir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C2I06_19050 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
DUF3638
RecG_dom3_C
UB2H
AAA_22
IstB_IS21
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AYV68800
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All DBs
Position
3991071..3994610
Genome browser
AA seq
1179 aa
AA seq
DB search
MLGLKQLFKQQEDIQNVISGLEAGLHEQLVSGLSNSARTLYMTSIYEKTKKPLLIVTHNL
LQAQKLYDDITNIVDEKDVFLYPANELIAAEISIASPELKAQRIEVLNYWAKKKSGIMIA
PVAGLRKLLPPKKLWKEAQLKLEIGQDLDLEAFLLKLVHMGYVRSEMVSSPGEFSVRGGI
LDIYPLTEEDPLRIELFDTEIDSIRAFSLEDQRSKEKKENVSIGPATEILYDENAVGDLL
AMLEKGLAQSLKKIKDEATKTLLTQNISREMEQLRNGQKPEQLYKYLSILYGEHISLIDY
LPNNGFLIVDEISRVQEMNDTLEKEEADWYTSLLGEGEIIHGLTLSQSINHLLHQAKQPI
VYLSLFLRHVPNTNPQNIINVSCKQMQNFHGQMNVLKTEMERWKKNHYTVVLLGNSEERL
EKLEQVLQDYDMEVMIQKNAKKISEGKIQLLEGHLQSGFELPILKLAVITEEELFKTKTK
KISKRRQKLTNAERIKSYSELNVGDYVVHVNHGIGKYLGIETLQINGVHKDYLHLRYQGN
DKLYVPVEQIDLVQKYVGSESKEPKIYKLGGNDWKKVKKKVESSVQDIADDLIKLYAERE
ASVGYAFSPDGEMQREFESGFAYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTE
VAIRAAFKAIADGKQVAFLVPTTILAQQHYETLRERFQDYPIEIGLLSRFRTRKQQNDTL
KGLKAGTIDIVVGTHRILSKDISYRDLGLLIIDEEQRFGVTHKEKIKQLKTNIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNGGLVREAIERELARNGQIYFLY
NRVEDIERKAEEISMLVPDARVTYAHGKMTENELESVMLGFLEGEYDVLVSTTIIETGVD
IPNVNTLIVQDADRMGLSQLYQLRGRVGRSNRVAYAYFTYKKDKVLTEVAEKRLQAIKEF
TELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGTISDEQRQ
TIEIDLDIDAYIPDFYINDGQQKIEMYKRFRGVTSLEDMEELREELIDRFGDYPEEVSYL
FKITEMKIYGKQAGVELIKQTKDEVLILLSEHGSDRMDGQKIFEKSSKYGRMIGLGMEGR
KLKMIFHVKGVEKEKWLKACHEMVEALNTFKKEPEQVTK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgttagggctaaaacaattatttaaacagcaagaagatatacaaaatgtcatttcagga
ctagaagctgggttacatgaacaattggtttcaggactttccaattcagcacgtactcta
tatatgacttcaatttatgaaaaaacaaaaaagccattactaattgtgactcataattta
ttacaggcgcaaaaactatacgatgatattaccaatattgtggatgaaaaggatgttttt
ctctatcctgcaaatgagttaattgcagctgaaattagtattgcaagtccagaattaaag
gctcagcgtatagaggtattgaattattgggcgaaaaaaaagtcgggaatcatgattgcg
ccagtagcaggtctgagaaagctacttcctccaaaaaagttatggaaggaagctcagcta
aaacttgagattgggcaagatcttgatttagaagcctttttattaaagcttgttcatatg
ggatatgtacgctcggagatggtttcatcgccgggagaatttagtgtgcgcggtggaatt
ttagatatttatccattaacagaggaagatccgctccggattgaattatttgatacagaa
attgattcgattagagccttttcacttgaagatcaacgttcgaaggaaaaaaaggaaaac
gttagcattggaccagcgacagaaattctttatgatgagaatgcagtcggcgacttgctg
gctatgttggaaaaaggcttagcccaaagcttaaagaaaataaaagatgaagcgacaaag
acgttactgacccaaaatattagtagggaaatggaacagctaagaaatgggcaaaagcca
gaacaattatataaatacttatccattctttatggagagcatatcagtttaatagattat
ttaccgaataacggttttttaattgtcgatgaaattagtagagtgcaagaaatgaatgac
acgcttgagaaagaggaagctgattggtatacaagcttgttaggtgagggagaaattatt
catgggttaaccttatcgcagagtatcaatcatcttttacatcaggcaaaacagcccatt
gtctacttatctttatttttacgccatgtgccaaatactaatccgcaaaatatcataaat
gtttcttgtaaacaaatgcagaatttccacgggcaaatgaatgttttgaagacagaaatg
gaaaggtggaaaaaaaatcattacaccgttgttctgcttggtaatagtgaggaacgctta
gaaaagttagagcaagttcttcaagattatgatatggaagtaatgattcaaaaaaatgct
aagaagatttctgaagggaaaattcaattattagaaggacatcttcagtcaggcttcgag
cttcctatcctaaaattagcggtaataacagaagaagaactatttaagacaaagactaaa
aagatatccaaaagaagacaaaagctgacaaatgcagagcgtattaagagctactctgag
ttaaatgttggtgactatgtagtccatgttaaccatggtattggtaaatatcttgggatt
gaaacacttcaaattaatggtgtccacaaggattacctacatttgcgatatcaaggaaat
gataagttatacgttcctgttgagcagattgatttggtccaaaaatatgttggatcagag
agcaaagaaccaaagatatacaaattgggcggtaacgattggaagaaagtaaagaaaaag
gtagagtcttctgttcaggatatagcggatgatcttattaagctatatgcagaaagagag
gcttctgttggttatgccttctctccggatggagaaatgcagcgagaatttgaaagtgga
tttgcctaccaggaaacagaggatcaattacggtctattcatgagattaaaaaagacatg
gaaagagaaagaccgatggatcgccttctttgtggagatgttggttatgggaaaacagag
gttgcaatcagagcggcttttaaagcgatagcggatggaaagcaagtagccttcttggtt
ccaacaactattttagcgcaacagcattatgaaacattgagagagcgttttcaggattat
ccaattgaaattggcttactcagcagatttagaacgagaaaacagcaaaatgacacgcta
aaaggtcttaaagcgggaacaattgatattgtcgtaggaacgcatcggattttatcaaag
gatatctcttatcgagatttaggtttattgattatcgatgaggaacaacgctttggtgta
acgcataaagagaaaataaaacaattaaaaaccaacattgatgtattgacgctaacggct
acaccaattccaagaacactccatatgtctatgctaggtgtacgtgacttatcagttatc
gagacccctcctgaaaatagattccctattcaaacctatgtaatggagtataacggtggg
cttgtaagagaagcgattgaaagagaacttgctagaaatggccaaatttattttctgtat
aaccgggtagaagacattgagagaaaggctgaggaaatttcaatgttggtgcctgacgct
agagttacttatgctcatgggaaaatgacagaaaatgaattggaatcagtaatgcttggg
tttttagaaggggaatatgatgttttagtaagtacgacgattattgaaacaggagtagat
ataccaaatgtaaatacactaattgtccaggatgcagatcgcatggggttgtcgcaatta
taccaattacgaggaagggttggacgttcgaatcgagtagcttatgcatattttacgtat
aagaaggataaagttctaacagaagttgcggaaaagagattgcaggcaattaaagagttt
acggaattaggatctggctttaaaattgctatgcgtgatttgactattcgtggtgctgga
aatcttctcggtgcccaacaacatggatttattgattcagttgggtttgatttatactct
caaatgctaaaagaagccattgaagagagaaaaggaacaattagtgatgaacaaaggcag
acgattgaaattgacctagatatagatgcctatattcctgatttttacattaatgatgga
cagcaaaaaattgaaatgtataaacgctttagaggtgttacttccttagaggatatggaa
gagctaagagaagaattaattgatcgttttggagactatccagaagaagtttcgtatctt
ttcaaaatcacagaaatgaagatttatggaaagcaagcaggagtagaattgatcaagcag
acgaaggatgaagttcttattttattatcggaacatggaagcgatcgaatggatggccaa
aaaatatttgagaaaagttctaagtatggtcgaatgattggtcttggtatggaaggaaga
aaattaaaaatgatcttccatgtaaaaggtgtcgaaaaagaaaagtggctgaaagcttgc
catgaaatggtagaagcattaaatacatttaaaaaagaaccagaacaagtaactaaataa
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