Niallia circulans: C2I06_19390
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Entry
C2I06_19390 CDS
T06357
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bcir
Niallia circulans
Pathway
bcir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C2I06_19390 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcir03021
]
C2I06_19390 (rpoB)
03400 DNA repair and recombination proteins [BR:
bcir03400
]
C2I06_19390 (rpoB)
Enzymes [BR:
bcir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C2I06_19390 (rpoB)
Transcription machinery [BR:
bcir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C2I06_19390 (rpoB)
DNA repair and recombination proteins [BR:
bcir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C2I06_19390 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AYV68850
UniProt:
A0A0J1IDR7
LinkDB
All DBs
Position
4055438..4058998
Genome browser
AA seq
1186 aa
AA seq
DB search
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGLREMFQDISPIEDFTG
NLSLDFIDYSLGDPKYSVEESKERDVTYSAPLRVKVRLVNKETGEVKDQDVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYYNGKLDKNGKKGFTATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEIIELIGDNEYLRNTLEKDNTEGTDKALLEIYERL
RPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPETG
EIIAEKGTLLDRRALDRIIPNLENNIGFKKLSPYGGVLEDDVVVQSVKIYSPLDEGDKEI
NVISNAYVEEAVKNISPSDIIASISYFFNLLHGVGLTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNRFG
FIETPYRRVDPETGKVSSRIDYLTADEQDNYVVAQANARLGEDGSFLDEDVVARFRDENV
VVKRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEAPRVGTG
MEYVSGKDSGAAVICKHPGIVEHVEAREVWVRRISEVDGQEVKGNLDKYKMLKFVRSNQG
TCYNQRPIVAVGDKVTKGEVLADGPSMELGELALGRNVLVAFMTWDGYNYEDAIIMSERL
VKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVKDGDL
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKVFNREDGDEL
PPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPVDIMLNPLG
VPSRMNIGQVLELHLGMAARSLNIHVASPVFDGAREEDVWETIREAGMAQDAKTVLYDGR
SGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFRVLMKELQSLGLD
VKILSSTEEEIEMRDTDDDDDIHQAESLTIVSETQEPESEKVGMQE
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaacttgttcagtatggacgacaccgccagcggagaagctacgcacgaatt
agtgaggttttagaattaccaaatcttattgaaatccaaacctcttcctatcaatggttt
ttagatgagggattgcgagaaatgttccaggacatttcgcctattgaagattttactggc
aatttatcacttgatttcattgattatagcttgggagatcctaagtattcagtggaagaa
tcgaaagagcgagatgttacatattctgcacctttgcgtgtgaaggttcgtcttgtaaat
aaagaaacaggagaagtaaaagaccaagatgtattcatgggtgatttcccgcttatgact
gaaactggtacttttgttattaatggtgcggaacgagttatcgtttctcagttagtacgt
tctccaagtgtttattataatggaaaacttgataaaaacggtaaaaaaggatttactgca
acagtaattcctaaccgtggagcatggctagagtatgaaacagatgcaaaggatgtagta
tatgtgcgtattgatcgtacacgtaaacttcctgttactgttcttttacgcgcattagga
tttggttccgatcaagagattattgaattgattggtgacaatgagtatttgcgtaatact
ttagaaaaagataacacagaaggaacagacaaagcgctattagaaatttatgagcgtctt
cgtccaggagaaccacctactgttgaaaacgcaaaaagtctattggtatcgagatttttc
gatccaaaaagatacgaccttgcgaatgtaggtcgttataaaatcaataaaaagcttcat
attaaaaatagattatttaatcagcgtttagcagaaacattagtggatcctgaaactggc
gagattatcgctgaaaaaggaactcttttagatcgccgtgcgcttgaccgtattattcct
aatctagaaaacaatatcggctttaaaaagctgagcccgtatggcggagtattagaagat
gatgttgttgtacaatcagtgaaaatttattcaccactagatgaaggggataaagaaatt
aatgttattagtaatgcatatgtagaagaagctgtgaaaaacatctctccttcagatatc
attgcttctatcagttatttctttaatttattacatggagtaggtctaacagatgatatt
gaccatttaggtaacagacgtcttcgttctgtaggcgaattgttgcaaaatcaattccgt
attggtttatcaagaatggagcgtgttgttcgtgaaagaatgtctattcaagacacgaat
actattacaccgcagcagttaattaatatcagacctgttattgcatctattaaagaattc
tttggaagctctcagctttctcaattcatggaccaaacaaatccattagcagaattaaca
cacaaacgtcgtttatctgcattaggacctggtggtttaacaagagaacgtgcaggaatg
gaagttcgtgacgttcactattctcactatggccgtatgtgtccgattgaaacacctgag
ggaccaaacattggtttgattaactctttatcttcttatgcaaaagtaaaccgttttggt
tttattgaaacaccatacagacgtgttgatcctgagacaggtaaagtatcgtcacgaatt
gattatttaacagctgatgaacaagataactatgttgttgcccaagcgaatgctcgttta
ggggaagatggttctttcttagatgaagatgtagtagcacgtttccgtgatgagaacgtt
gttgttaagcgtgatcgtgtagactatatggacgtatctccaaagcaggttgtatctgct
gcaacagcgtgtatcccgttcttagaaaatgatgactctaaccgtgccttaatgggtgcg
aacatgcagcgtcaagcagtacctttaatgcagccagaagctccaagagtaggaactgga
atggaatacgtttcaggaaaagactcaggggcagctgttatctgtaagcatcctggtatt
gttgaacatgtagaagctcgtgaagtatgggttagacgtatttctgaagtagatggtcaa
gaagtaaaaggaaatcttgataaatataagatgcttaagtttgttcgttcaaaccaaggt
acttgttataatcaacgcccgattgttgctgtaggtgataaagtaacaaaaggtgaggtt
ttagctgatggtccttctatggaacttggtgaattagcccttggacgtaacgtattagtt
gcctttatgacatgggacggatacaactatgaggatgctattatcatgagtgaacgctta
gtaaaagatgatgtttatacttctattcatattgaagaatatgaatcagaatctcgtgat
acaaaattaggaccagaagaaattacgcgtgatattccgaatgtcggagaagatgcgtta
cgtaacttagatgatcgtggtattattcgtatcggtgccgaagtaaaagatggtgatttg
cttgttggtaaagttacacctaaaggggtaactgaattaacagcagaagaaagattatta
catgctatctttggtgaaaaagcacgtgaagtacgtgatacaagtttacgcgttccacat
ggtggcggcggaatcgtccacgatgttaaagtcttcaatagagaagatggagacgaatta
ccaccaggtgttaaccaattagtacgtgtatatattgttcaaaaacgtaaaatccatgaa
ggcgataagatggcaggtcgtcacggtaacaaaggggttatttcccgaattttacctgaa
gaagatatgccatacttaccagacggaacaccagttgatatcatgttaaatccactaggt
gtaccatcacgtatgaatatcggtcaggttttagaattgcatctgggaatggctgcaaga
agcttaaatatccatgttgcatcaccagtatttgatggtgctcgtgaggaagatgtatgg
gaaacaattagagaagctggaatggcgcaagatgcgaaaacagtactatatgacggacgt
tcaggtgaaccttttgataaccgtgtatccgttggagttatgtatatgatcaaacttgct
catatggttgatgataaactacatgctcgttcaacaggaccatattctttagtaacgcaa
caaccactaggaggaaaagctcagttcggtggtcagcgttttggagagatggaggtttgg
gcgctggaggcttatggagctgcttatactttacaagaaattcttactgttaaatcagat
gacgttgttggtcgtgtgaaaacatatgaagcgattgttaaaggagaaaacgttccagaa
ccaggagttcctgaatcattccgcgtattaatgaaagagctgcaaagtttaggattagat
gtgaaaatcttatctagcacagaagaagaaattgaaatgagagacacagatgatgacgat
gatattcatcaagctgaatctctgacaattgtttccgaaacacaagagcctgagtcagaa
aaggtaggcatgcaagaataa
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integrated database retrieval system
