Niallia circulans: C2I06_19395
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Entry
C2I06_19395 CDS
T06357
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcir
Niallia circulans
Pathway
bcir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C2I06_19395 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcir03021
]
C2I06_19395 (rpoC)
03400 DNA repair and recombination proteins [BR:
bcir03400
]
C2I06_19395 (rpoC)
Enzymes [BR:
bcir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C2I06_19395 (rpoC)
Transcription machinery [BR:
bcir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C2I06_19395 (rpoC)
DNA repair and recombination proteins [BR:
bcir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C2I06_19395 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AYV68851
UniProt:
A0A0J1IDV3
LinkDB
All DBs
Position
4059204..4062803
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTALEKKQLLSEKEYRAYRDKYGVKFQASMGAESIKKLLS
DIDLNKEVDALKEELKTAQGQRRTRAIKRLEVLEAFRGSGNEPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPRE
MAIELFKPFVMKELVEKGIAHNIKSAKRKIERLQPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGAVGEGMIFNDTNEALLAYQNGYVHLHTRVAVR
ASSLNNETFTEEQNKQLLLTTVGKLVFNEILPKSFPYINEPTKTNLEEKTPERYFVEPGV
DVPAAIRELPIIEPFKKKILGNIIAEVFKRFKITETSKMLDRMKDLGFKHSTKAGITVGV
ADIVVLGEKQEIIEEAQSKVDNVMKQFRRGLITEEERYDRVISIWSAAKDTIQAKLMKSL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIISSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLLVSALKEGTEIIESLD
ERLIGRYARRSIKHPETNEVIVPENGLITEDLAVEIVEANIEEVWIRSAFTCNTRHGVCK
KCYGRNLATGQEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVITEMAGVVVGINEGRDRQHEIVVQGELETRTYTAPYTARLKVKVDDVVEQ
GQELTEGSIDPKELIKVKNVTAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKIRV
VDAGETDVLPGTLLDIHQFTDANAKALREGKLPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMPRYRHAEPITAEELTEESVTVE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgttggatgttaataattttgaatatatgaaaataggtctagcttcgccagataaaatc
cgttcatggtcatttggtgaagtcaaaaagccagaaacaattaactatcgtactttaaaa
ccggaaaaagatggcttgttctgtgagcgtatttttggtcctacaaaagactgggaatgt
cactgtggtaaatacaagcgtgttagatacaaaggggtagtctgtgaccgttgtggagta
gaagttactcgtgcaaaggttcgtcgtgaacgtatgggacacatcgaattagcggctccg
gtatcacatatttggtatttcaaaggaatcccaagccgtatgggtctagtgttagatatg
tctccacgtgcactggaagaagttatttattttgcttcttatgttgtaacagatccaggt
gacactgctcttgagaagaaacaacttctttcagagaaagagtatagagcataccgtgat
aaatacggtgtgaagttccaagcttcaatgggtgctgaatctataaagaagttattatca
gatattgatttaaataaagaagtagatgcattaaaagaagaattaaaaacagcacaaggg
caaagaagaactcgtgcgattaaaagactagaagtattagaagcgttccgtggttctgga
aatgagccttcttggatgattcttgacgtgcttccagtaattcctccagaattgcgcccg
atggttcaattagatggtggccgctttgcgacttctgacctaaatgatttataccgtcgt
gttattaaccgtaataatcgtctaaaaagattattagacttaggtgcaccaagcattatc
gtacaaaacgaaaaacgtatgctccaagaagctgtagatgcgttgattgataacggccgt
cgcggacgtccagtaactggtcctggtaacagaccacttaagtcattgtcacatatgctt
aaaggtaaacaaggacgtttccgtcaaaacttattaggaaaacgtgttgattattctggt
cgttctgttatcgttgtaggtccgaacttaaagatgtatcaatgtggtctacctagagaa
atggcgattgaattatttaagcctttcgtaatgaaagagttagtagaaaagggtattgcc
cacaatattaaatctgcgaaaagaaaaatcgaaagacttcaaccggaagtttgggatgtg
ctggaggaagttattaaggagcaccctgttttacttaaccgcgccccaactttacacaga
ttaggtattcaagcatttgaaccaacgctagtagaaggccgtgcaattcgtctacatccg
ctagtatgtacagcttacaacgctgactttgacggagaccaaatggcggttcacgttccg
ttatcatctgaagcacaagcagaagctcgtttacttatgcttgcagcccaaaacattttg
aaccctaaagatggtaagccagttgttactccttcgcaggatatggtattaggaaactac
tacctaacattagagcgtgaaggtgcagttggagaaggtatgatcttcaatgatacaaat
gaggctttattagcttatcaaaatggttatgtgcatttacacactcgtgtagcggtacgt
gctagttctttaaataacgaaacatttacagaagaacagaataaacaattgttgttaaca
acagtaggtaagttagtgttcaatgaaattttaccaaaatctttcccgtacattaacgaa
ccaacgaaaacaaacttagaagaaaaaactcctgaaagatactttgttgagccaggtgta
gatgtacctgctgcaattagagagttgccaattatcgaaccgttcaaaaagaaaatttta
ggtaatataattgctgaagtctttaaacgattcaagataacagaaacttctaagatgttg
gatagaatgaaagacttaggatttaaacattctactaaagctggtattactgttggtgta
gctgacatcgtagtattaggcgaaaaacaagaaattatcgaagaagcacaaagcaaagta
gataatgtaatgaaacagtttagacgtggattaatcacagaggaagagcgttatgatcgc
gttatttctatctggagtgctgcaaaagatacaatccaggcaaaactgatgaaatcctta
gataaacgtaatccaatctttatgatgagtgactccggagcccgtggtaacgcatctaac
tttacacagcttgctggtatgcgtggtttgatggccaacccggctggtagaatcatcgaa
ttaccgattatctcaagtttccgtgaaggtttaacggtattagagtactttatctctaca
catggtgcgcgtaaaggtcttgccgatacagcactaaaaacagcagactctggttacttg
actcgtcgtcttgttgacgtagcacaagatgtcattgttcgtgaggatgattgtggtaca
gacagaggattattagtttcggcgcttaaagaaggtacagaaattatcgaatcactagat
gagcgtttaatcggaagatatgcaagaagatcaattaaacacccagaaacgaacgaagtt
attgttcctgaaaatggacttattacagaagatttagcagtggaaattgttgaagctaat
atcgaagaagtatggatccgttcggcgtttacatgtaatactcgtcatggtgtatgtaaa
aaatgttatggtcgcaacctagcaactggtcaagaagtggaagttggagaagctgttggt
attattgcagcacaatctatcggggaaccgggtacacagttaacaatgcgtacattccat
actggtggggttgctggagacgatatcacacaaggtttacctcgtatccaagaaatattc
gaagctcgtaatccaaaagggcaagcggttattacggaaatggcaggggttgttgttggt
atcaacgaaggtagagaccgtcaacatgaaattgttgttcaaggtgaattagaaactaga
acatatactgctccttatacagcaaggcttaaagtaaaagttgatgatgtagtagagcaa
gggcaggaattaacagaaggttctattgatccgaaagaattaattaaagtgaaaaacgtt
acagcagtacaagaatatctacttcgtgaagtacaaaaagtttatcgtatgcaaggggta
gaaattggtgataagcacgtagaagtaatggttcgccaaatgctacgcaaaatcagagtg
gtagatgctggtgagacagatgtattaccaggtactctattagacattcaccaatttact
gatgcaaacgcaaaagctttaagagaaggaaaacttcctgcaacaggaagaccggtatta
cttggtatcacaaaagcatctcttgaaacagattcattcttatcagctgcatcattccaa
gaaactacaagagttctgacagatgctgcgattaaaggtaaacgcgatgaattactagga
ttgaaagagaatgtaattattggtaaattagttcctgctggaactggtatgccaagatat
cgtcatgctgaacctattactgcagaagaactaacagaagagtctgttactgtagagtaa
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integrated database retrieval system
