Niallia circulans: C2I06_21880
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Entry
C2I06_21880 CDS
T06357
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bcir
Niallia circulans
Brite
KEGG Orthology (KO) [BR:
bcir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bcir03009
]
C2I06_21880
Enzymes [BR:
bcir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
C2I06_21880
Ribosome biogenesis [BR:
bcir03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
C2I06_21880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
PrmA
MTS
Methyltransf_15
Cons_hypoth95
RrnaAD
Methyltransf_11
N6_Mtase
TPMT
PCMT
N6_N4_Mtase
TRM
Methyltransf_4
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
AYV69275
LinkDB
All DBs
Position
4578389..4579762
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AA seq
457 aa
AA seq
DB search
MSKTLPVQKNDIIDIVFEDLTHEGSGVAKIDGYPLFIPNGLPGEKATVKVIKTNKNYGFG
RLLEIKERSPYRVEAPCLIYKECGGCQLQHLSYEGQLKTKHKHVKDVLERIGKINTIVHP
TLGMENPWRYRNKSQVPIGEQEGGLIGGFYQQRSHQIINMEQCLIQQEENDYVVNTVKDI
CSKYGVRAYDEARHKGDLRHIMVRRGLVTKEIMIVLITRTQDIPNRKAIVDEIVQKVPNI
KSIIHNVNNKKTNVIMGDTTRVLWGEETITDYIGDVRFAISARSFYQVNPEQTKVLYEKA
LEYADLSGEEKVIDAYCGIGTISLFLAKKARKVFGVEIVPQAIEDARNNAVLNDIHNVDF
AVGEAEVVIPNWYKEGNEADVLVVDPPRKGCDEALLQTILDMKPKKVVYVSCNPATLARD
LRILEDGGYKTEEVQPVDMFPQTMHVEAVARLTLNIV
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacattacccgttcaaaagaacgatataatagatatagtttttgaagattta
acccatgaaggttcaggtgtggcaaagatagatggttaccccctctttatccccaatgga
cttccaggtgaaaaagcaactgtaaaagtaattaaaacaaataagaattacggttttggt
cgtctgctagagattaaagaaagaagtccctatcgtgtagaagcgccatgccttatatac
aaggaatgcggcggctgtcaattacagcatttaagctatgaaggacaattgaaaacaaaa
cataaacacgtgaaggatgttttagaacgaattggaaaaatcaatacgattgttcatcca
acactcgggatggaaaacccttggcgttaccgtaataaatcccaagttccaattggagaa
caagaaggtggcctcattggcggattttatcaacagcgctctcatcaaattattaatatg
gagcaatgcctcatccaacaagaagaaaatgattatgtcgtaaatacagtaaaagatatt
tgttcaaaatatggggttcgtgcatatgacgaagctcgtcataagggagatttacgtcat
attatggtaagaagaggattggttacgaaggaaatcatgattgtcttaattacccgtaca
caggatatccccaatcgcaaagcaattgttgatgaaattgttcaaaaggtgccaaatatt
aaatcgattatccacaatgtgaataacaaaaaaacaaatgtgataatgggagatactact
cgcgtactttggggagaagagacgattacggattatattggcgatgtaagatttgctatt
tcagctcgttctttttatcaagtaaatccggaacaaacaaaggtgctttatgagaaagca
ttggagtatgctgatttgagtggagaagagaaagtaattgatgcctattgtggaatcggc
accatttctttatttttggcaaaaaaggcaaggaaagtatttggagttgaaattgtccca
caagcaattgaagatgcaagaaataacgctgtgttaaatgatatccacaatgtcgatttt
gcagtaggagaagcagaagtagttatccccaactggtataaagaaggaaatgaagcagat
gttttagtagtagatccaccaagaaaaggctgtgatgaagcattactgcaaacaattctt
gatatgaagccaaagaaagtcgtctatgtgtcctgtaatccagcgactttagctcgtgat
ttgcgcatattagaggatggtggctataagacagaagaagtacagcctgtggatatgttt
cctcaaacgatgcatgtggaggcagtggcgagattaacgttgaatattgtctaa
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