Burkholderia cenocepacia J2315: BCAL0933
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Entry
BCAL0933 CDS
T00771
Symbol
rhlE1
Name
(GenBank) putative ATP-dependent RNA helicase 1
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bcj
Burkholderia cenocepacia J2315
Pathway
bcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCAL0933 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcj03019
]
BCAL0933 (rhlE1)
Enzymes [BR:
bcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BCAL0933 (rhlE1)
Messenger RNA biogenesis [BR:
bcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BCAL0933 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Ric8
Sacchrp_dh_NADP
Cas3-like_C_2
DegT_DnrJ_EryC1
CMS1
CARD_2
Motif
Other DBs
NCBI-ProteinID:
CAR51239
UniProt:
B4EBW3
LinkDB
All DBs
Position
1:complement(1015888..1017321)
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AA seq
477 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQQPRGGGGGGNRQPRAGGSGQPAAKR
DGHAQPKAAKPRTQGGAGAGGNGGGRPAGGGNGARPANGNAAHANRNRSSRSGQRGH
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcctggccgaaccgctggtcaaggcggtcaacgagctcggc
tacacgtcgccgaccccgatccagcagcaggcgatcccggccgtcctcggcggcggcgac
ctgctcgccggcgcacagaccggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcctgcacacgttctacgccgagcaccgtggcgcgaagcgcgcggtgcgcgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtccgtgcgtacagc
aagtacctgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccaggccgcctgctcgatcac
atgcagcagaagaccatcgacctgtcggatctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
cagcgtcagaacctgctgttctcggccaccttctccgatgaaatcaaggcgctcgccgac
agcctgctcgactcgcccgccctgatcgaagtcgcgcgccgcaacacgaccgccgagagc
gtcgcgcagaagatccacccggtcgatcgcgaccgcaagcgcgagctgctcacgcacctg
atccgcgaacacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggcttgccgagcagctgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgcacgcgcgcgctggccgagttcaagaacagcacgctgcaggtgctc
gtcgcgaccgatatcgccgcgcgcgggatcgacatcgaccagttgccgcacgtcgtcaac
ttcgacctgccgaacgtgcccgaggattacgtgcaccggatcggccgcacgggccgcgcg
ggggcgaccggcgaagccgtgtcgctcgtgtgcgtcgacgagaagcagttgctgcgcgac
atcgagcggctgatcaagcgcgagatcccgcaggaagtgatcgcgggcttcgaacccgat
ccgaacgcgaagccggagccgatccagcagcgccgcgggcagcagcaaccgcgtggcggt
ggcggcggcggcaatcgccagccgcgcgccggcggctcaggccagccggccgcgaaacgc
gacggccacgcgcaaccgaaggccgcgaagccgcgcacgcaaggcggtgccggcgccggt
ggtaacggcggcggacgtccggcgggcggcggcaacggcgcccgcccggcgaacggcaac
gccgcgcacgcgaaccgcaaccgttcgtcgcgcagcggccagcgcggtcactga
DBGET
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