Burkholderia cenocepacia J2315: BCAL2230
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Entry
BCAL2230 CDS
T00771
Name
(GenBank) putative ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bcj
Burkholderia cenocepacia J2315
Brite
KEGG Orthology (KO) [BR:
bcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcj03019
]
BCAL2230
Enzymes [BR:
bcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BCAL2230
Messenger RNA biogenesis [BR:
bcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BCAL2230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
nSTAND3
NACHT
T2SSE
AAA_19
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
CAR52531
UniProt:
B4EDV9
LinkDB
All DBs
Position
1:complement(2465772..2469980)
Genome browser
AA seq
1402 aa
AA seq
DB search
MSNVSKSPAPTRANTPSAQHPDGAADARQQQGQPPRQQQDKPAGTAAPAPRGPRGDERRG
GARQPAAKGAPQATGERAPRRERPPRAPVAPNPVPPITYPESLPVSGKRDEIARAIADHQ
VVIVCGETGSGKTTQLPKICLDLGRGFGAGGTGLIGHTQPRRLAASSTGRRIAEELGTPF
GEVVGYKVRFTDNLAPGASVKLMTDGILLAETQTDPLLKAYDMLIIDEAHERSLNIDFLL
GYLKEILPRRPDLKLIVTSATIDADRFARHFGTDARPAPVIEVSGRLYPVEMRYRPVAED
RPAVKNAEGTGGRDRVKTAREAERDLMDAIVDAVDELCREGPGDVLVFLPGEREIREAAE
ALRKHHPPHTEILPLFARLSAADQDKVFKASNARRIVLATNVAETSLTVPGIRYVVDTGL
ARVKRYSYRNKVEQLQVESISQAAANQRAGRCGRVADGVCIRLYEESDYQARARFTDPEI
LRSSLASVILRMKSLHLTAIESFPFLEPPPGRAIADGYQLLNELGAVDDDNALTPLGREL
ARLPLDPRVGRMILAARDQQSLREVLIIASALSVQDPRDRPIEAQEQADQAHRRFADERS
EFLQWLKIWAWFEEAVAHKKSNRQLIDACRQNFLSHLRLREWRDVHSQLLTVVREHGWRL
NEVEATYEQIHLALLTGLLGNLGMKADDDPHYLGARGIKFYLWPGSALAKKAGRWVMAAE
LVETSRLYARCLAKIEPEWVEKIGAHLLKKSLSEPHWEKRPAQVSAFERATLYGLPIYHR
RRVAFGKQDPARARELFIRGALVEGEFDTKLPFFAHNRKLLADIEQLEHKSRRQDVLVDD
ELIYAYYDHAIPEGIHTGAAFERWYRDEVKKGGQAEDKQRLLYLSRDDLMRHEAAGVTTD
LFPKRATMAGVEMALTYHFEPGTPRDGVTLAVPLFALNQVDARRCEWLVPGMLKEKVQLL
LKSLPQKLRRHCVPLPEYAAGFVERMGRERFGAGGLVEALIADVRGETQVAMKTADFKLE
TLPAHLFMNFKVIDEHGRQLAMGRNLAQLRQELGAQAQQQFQKIAAASTIATGGDADAGH
ALGHASASAATPAVAARGAKAGKGAAPQTAVPAETGATALYENLTTWNFGKLPELLEIRR
RGQTLYGYPALVDRGTHCDVEVFDSPEEAARIHRAGLRRLFALQLKEPIKFLEKNLPGLR
EMAMQYMSLGTQDELRDQLIDTALDRACLQDPLPDDDASFHARRDEGRSRLNLLAQEIAR
LVGQILAEYAGLVKKLAQAKPFAQAHADLQQQLAALVGKRFVIDTPYAQLAHFPRYLKGI
ALRIDKLKADPARDAKQSAELLPLAQQYQRAVSQRGGVADARLAEFRWLLEELRISLFAQ
ELRTPMPVSVKRLHKVWESMQR
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtttctaaaagtcccgcgccgacgcgggccaatacgccgtcggcgcagcac
ccggatggtgcggccgatgcgcgccagcagcagggccagccgccccgccagcagcaggac
aagccggcgggcacggcggcacccgcaccgcgcgggccgcgcggcgacgaacggcgcggc
ggcgcgcgccagccggccgcgaagggcgcgccgcaggcaacgggcgagcgcgccccgcgc
cgcgagcgtccgccgcgcgccccggtcgcaccgaatcccgttccgccgatcacgtacccg
gaaagcctgcccgtctcgggcaagcgcgacgagatcgcgcgcgcgatcgccgatcatcag
gtcgtgatcgtctgcggcgaaaccggctcgggcaagaccacccagttgccgaagatctgt
ctcgatctcggccgcggcttcggcgccggcggcacgggcctgatcggccatacgcagccg
cggcgcctggccgcctcgtcgaccggccgccggatcgccgaggaactcggcacgccgttc
ggcgaggtggtcggctacaaggtgcgctttaccgacaatctcgcgccgggcgcgtccgtc
aagctgatgacggacggcatcctgctcgcggagacgcagaccgacccgttgctgaaggcg
tacgacatgctgatcatcgacgaggcgcacgagcgcagcctgaacatcgacttcctgctc
ggctacctgaaggaaatcctgccgaggcggccggacctgaagctgatcgtcacgtccgcg
acgatcgacgccgatcgcttcgcgcgccatttcggcaccgacgcgcgccccgcgcccgtg
atcgaggtgagcgggcggctgtatccggtcgagatgcgctaccgcccggtggccgaggat
cgcccggccgtgaagaacgccgaaggcacgggcggccgcgaccgcgtgaagaccgcgcgc
gaagccgagcgcgacctgatggacgcgatcgtcgacgcggtcgacgagctgtgccgcgaa
ggccccggcgacgtgctggtgttcctgcccggcgagcgcgagatccgcgaggcggccgag
gcgctgcgcaagcaccatccgccgcataccgagatcctgccgctgttcgcgcggctctcg
gcggccgaccaggacaaggtgttcaaggcgtcgaacgcgcgccgcatcgtgctcgcgacc
aacgtggctgaaacctcgctgacggtgcccggcatccgctacgtggtcgataccggcctc
gcgcgcgtgaagcgctattcgtaccggaacaaggtcgagcagctgcaggtcgagtcgatc
tcgcaggcggccgcgaaccagcgcgcgggccgctgcggccgcgtggccgacggcgtctgc
atccgcttgtacgaggaaagcgactaccaggcgcgcgcgcgcttcaccgacccggaaatc
ctgcgctcgtcgctcgcgtcggtgatcctgcggatgaagtcgctgcacctgaccgcgatc
gaatcgttcccgttcctcgagccgccgcccggccgcgcgatcgcggacggttatcaactg
ctgaacgaactcggcgcggtcgacgacgacaacgcgctgacgccgctcggccgcgagctc
gcgcgcctgccgctcgacccgcgcgtcggccggatgattctcgccgcgcgcgaccagcag
tcgctgcgcgaggtgctgatcatcgcgagcgcgctgtccgtgcaggacccgcgcgaccgc
ccgatcgaagcgcaggagcaggccgaccaggcgcaccgccggttcgccgacgagcgctcc
gaattcctgcagtggctgaagatctgggcgtggttcgaagaggccgtcgcgcacaagaaa
tcgaatcgccagctgatcgatgcatgccggcagaacttcctgtcgcacctgcggctgcgc
gagtggcgcgacgtccattcgcagctgctgacggtcgtgcgcgagcacggctggcggctc
aacgaagtcgaggccacctacgagcagattcatctggccctgttgacgggcctgctcggc
aacctcgggatgaaggccgacgacgatccgcattacctcggcgcgcgcggcatcaagttc
tacctgtggccgggctccgcgctcgcgaagaaggccggccgctgggtgatggcggccgaa
ctcgtcgagacgagccggctgtacgcgcgctgcctcgcgaagatcgagcccgagtgggtc
gagaagatcggcgcgcacctgctgaagaaatcgctgtcggagccgcactgggaaaagcgt
ccggcgcaggtcagcgcattcgagcgcgcgacgctgtacgggctgccgatctaccaccgg
cggcgcgtcgcgttcggcaagcaggacccggcgcgcgcccgcgagctgttcatccgcggc
gcgctggtcgaaggcgaattcgacacgaagctgccgttcttcgcgcacaaccgcaagctg
ctcgccgacatcgagcagctcgagcacaagtcgcgccgtcaggacgtgctggtcgacgac
gaactgatctacgcgtactacgaccatgcgattccggaaggcatccacacgggcgccgcg
ttcgagcgctggtatcgcgacgaggtgaagaagggcggccaggcggaggacaagcagcgg
ctgctgtacctgtcgcgcgacgacctgatgcgtcacgaggcggccggcgtcacgaccgac
ctgttcccgaagcgcgcgacgatggcgggtgtcgaaatggcgctcacctatcacttcgag
ccgggcacgccgcgcgacggcgtgacgctcgcggtgccgctcttcgcgctgaaccaggtc
gacgcgcgccgctgcgagtggctcgtgccggggatgctgaaggaaaaggtccagttgctg
ctgaagtcgctgccgcagaagctgcgccggcactgcgtgccgctgcccgaatacgcggcc
ggcttcgtcgagcggatgggccgcgagcgcttcggtgcgggcgggctcgtcgaggcgctg
atcgccgacgtgcgcggcgagacgcaggtcgcgatgaaaacggccgacttcaagctcgag
acgctgcccgcgcacctgttcatgaacttcaaggtgatcgacgagcacggccgccagctc
gcgatggggcgcaatctcgcgcagctgcgccaggagctgggcgcgcaggcgcagcagcag
ttccagaagatcgcggcggcgtcgacgatcgcgaccggcggcgacgccgacgccggtcac
gcgctcggccacgcgtccgcgtcggctgccacgcccgcggttgccgctcgcggcgcgaag
gccggcaagggcgccgcgccgcagacggccgtcccggcggaaaccggcgcgaccgcgctg
tacgaaaacctgacgacgtggaatttcggcaagctgcccgagttgctggaaatccgccgg
cgcggccagacgctgtacggctatccggcgctcgtcgaccgcggcacgcactgcgacgtc
gaggtgttcgattcgccggaggaggccgcgcgcattcaccgggccggcttgcggcggctg
ttcgcgctgcagctgaaggagccgatcaagttcctagagaagaatctgccgggcctgcgc
gagatggcgatgcagtacatgtcgctcggcacgcaggacgaactgcgcgaccagctgatc
gacacggcgctcgaccgcgcgtgcctgcaggatccgctgcccgacgacgacgcgagcttc
cacgcgcgccgcgacgagggccgcagccgcctgaacctgctcgcgcaggaaatcgcgcgg
ctcgtcgggcagatcctggccgaatacgcggggctcgtgaagaagctcgcgcaggcgaag
ccgttcgcgcaggcgcatgcggatctgcagcagcaactggctgcgctggtcggcaagcgc
ttcgtgatcgacacgccttacgcgcagcttgcgcatttcccgcgctacctgaagggcatc
gcgctgcgcatcgacaagctgaaggccgatccggcacgcgacgcgaagcagtcggccgag
ctgctgccgctcgcccagcagtaccagcgcgcggtgtcgcagcgcggcggcgtcgccgat
gcgcggctcgcggaattccgctggctgctcgaggaattgcggatttcgttgttcgcgcag
gaactgcgcacgccgatgccggtctctgtcaagcgtctgcacaaggtctgggagtcgatg
cagcgctag
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